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AT3G10230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lycopene cyclase
Curator
Summary (TAIR10)
Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene.
Computational
Description (TAIR10)
lycopene cyclase (LYC); CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671), Lycopene cyclase, beta/epsilon (InterPro:IPR010108); BEST Arabidopsis thaliana protein match is: Lycopene beta/epsilon cyclase protein (TAIR:AT5G57030.1); Has 1445 Blast hits to 1439 proteins in 252 species: Archae - 29; Bacteria - 306; Metazoa - 0; Fungi - 5; Plants - 374; Viruses - 0; Other Eukaryotes - 731 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G10230-MONOMERBioCyc:ARA:GQT-2589-MONOMERBioCyc:MetaCyc:AT3G10230-MONOMEREC:5.5.1.19
eggNOG:ENOG410IGXMeggNOG:ENOG410XPIYEMBL:AC009400EMBL:AF117256
EMBL:AY059749EMBL:AY091396EMBL:CP002686EMBL:L40176
EMBL:U50739EnsemblPlants:AT3G10230EnsemblPlants:AT3G10230.1entrez:820185
Gene3D:3.50.50.60GeneID:820185Genevisible:Q38933GO:GO:0004497
GO:GO:0009507GO:GO:0016117GO:GO:0016705GO:GO:0016853
GO:GO:0044550gramene_pathway:5.5.1.-gramene_pathway:PWY-5943gramene_plant_reactome:1119449
gramene_plant_reactome:6875804gramene_plant_reactome:6876109gramene_plant_reactome:6876474hmmpanther:PTHR13789
hmmpanther:PTHR13789:SF249HOGENOM:HOG000224851InParanoid:Q38933InterPro:IPR010108
InterPro:IPR023753KEGG:ath:AT3G10230KO:K06443OMA:HRLYQFG
PaxDb:Q38933Pfam:PF05834Pfam:Q38933PhylomeDB:Q38933
PRIDE:Q38933PRO:PR:Q38933ProteinModelPortal:Q38933Proteomes:UP000006548
RefSeq:NP_001078131.1RefSeq:NP_187634.1SMR:Q38933STRING:3702.AT3G10230.1
SUPFAM:SSF51905TAIR:AT3G10230tair10-symbols:LYCTIGRfam:TIGR01790
TIGRFAMs:TIGR01790UniGene:At.1532UniGene:At.71154UniGene:At.71830
UniPathway:UPA00802UniPathway:UPA00805UniProt:Q38933
Coordinates (TAIR10) chr3:-:3164340..3165845
Molecular Weight (calculated) 56179.90 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.13
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTLLKTPNK LDFFIPQFHG FERLCSNNPY HSRVRLGVKK RAIKIVSSVV SGSAALLDLV PETKKENLDF ELPLYDTSKS QVVDLAIVGG GPAGLAVAQQ
101: VSEAGLSVCS IDPSPKLIWP NNYGVWVDEF EAMDLLDCLD TTWSGAVVYV DEGVKKDLSR PYGRVNRKQL KSKMLQKCIT NGVKFHQSKV TNVVHEEANS
201: TVVCSDGVKI QASVVLDATG FSRCLVQYDK PYNPGYQVAY GIVAEVDGHP FDVDKMVFMD WRDKHLDSYP ELKERNSKIP TFLYAMPFSS NRIFLEETSL
301: VARPGLRMED IQERMAARLK HLGINVKRIE EDERCVIPMG GPLPVLPQRV VGIGGTAGMV HPSTGYMVAR TLAAAPIVAN AIVRYLGSPS SNSLRGDQLS
401: AEVWRDLWPI ERRRQREFFC FGMDILLKLD LDATRRFFDA FFDLQPHYWH GFLSSRLFLP ELLVFGLSLF SHASNTSRLE IMTKGTVPLA KMINNLVQDR
501: D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)