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AT5G47620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.882
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G07810.1); Has 101 Blast hits to 101 proteins in 41 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YA8ZeggNOG:KOG4205EMBL:AY065220EMBL:AY142691
EMBL:CP002688EnsemblPlants:AT5G47620EnsemblPlants:AT5G47620.1EnsemblPlants:AT5G47620.2
entrez:834812ExpressionAtlas:Q8VZ63Gene3D:3.30.70.330GeneID:834812
GO:GO:0000166GO:GO:0003676Gramene:AT5G47620.1Gramene:AT5G47620.2
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF481InterPro:IPR000504InterPro:IPR012677
Pfam:PF00076Pfscan:PS50102PhylomeDB:Q8VZ63PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_568685.1RefSeq:NP_851149.1SMART:SM00360
SMR:Q8VZ63STRING:3702.AT5G47620.4SUPFAM:SSF54928TAIR:AT5G47620
UniGene:At.22737UniProt:Q8VZ63
Coordinates (TAIR10) chr5:-:19302548..19304278
Molecular Weight (calculated) 46134.40 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.31
Length 431 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)