suba logo
AT5G47540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mo25 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT4G17270.1); Has 570 Blast hits to 568 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 142; Plants - 154; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP4SeggNOG:KOG1566EMBL:AB025628EMBL:AF428296
EMBL:CP002688EnsemblPlants:AT5G47540EnsemblPlants:AT5G47540.1entrez:834804
ExpressionAtlas:Q9FGK3Gene3D:1.25.10.10GeneID:834804Genevisible:Q9FGK3
Gramene:AT5G47540.1hmmpanther:PTHR10182hmmpanther:PTHR10182:SF12HOGENOM:HOG000234711
InParanoid:Q9FGK3InterPro:IPR011989InterPro:IPR013878InterPro:IPR016024
KEGG:ath:AT5G47540KO:K08272OMA:EQFRDFFPANTHER:PTHR10182
PaxDb:Q9FGK3Pfam:PF08569Pfam:Q9FGK3PhylomeDB:Q9FGK3
PRIDE:Q9FGK3PRO:PR:Q9FGK3ProteinModelPortal:Q9FGK3Proteomes:UP000006548
RefSeq:NP_199565.4SMR:Q9FGK3STRING:3702.AT5G47540.1SUPFAM:SSF48371
TAIR:AT5G47540UniGene:At.66684UniGene:At.7964UniProt:B3LFB8
UniProt:Q9FGK3
Coordinates (TAIR10) chr5:-:19283265..19285328
Molecular Weight (calculated) 39459.40 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.35
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGLFKSKPR TPADLVRQTR DLLLFSDRST SLPDLRDSKR DEKMAELSRN IRDMKSILYG NSEAEPVAEA CAQLTQEFFK EDTLRLLITC LPKLNLETRK
101: DATQVVANLQ RQQVNSRLIA SDYLEANIDL MDVLIEGFEN TDMALHYGAM FRECIRHQIV AKYVLESDHV KKFFDYIQLP NFDIAADAAA TFKELLTRHK
201: STVAEFLTKN EDWFFADYNS KLLESSNYIT RRQAIKLLGD ILLDRSNSAV MTKYVSSRDN LRILMNLLRE SSKSIQIEAF HVFKLFAANQ NKPADIVNIL
301: VANRSKLLRL LADLKPDKED ERFEADKSQV LREIAALEPR DLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)