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AT2G39130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G54830.1); Has 5002 Blast hits to 4966 proteins in 291 species: Archae - 22; Bacteria - 61; Metazoa - 1689; Fungi - 998; Plants - 1489; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:CP002685EnsemblPlants:AT2G39130
EnsemblPlants:AT2G39130.1entrez:818499GeneID:818499GO:GO:0005774
GO:GO:0016021Gramene:AT2G39130.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF240
InParanoid:F4IUW3InterPro:IPR013057iPTMnet:F4IUW3KEGG:ath:AT2G39130
KO:K15015OMA:HIRSHWYPaxDb:F4IUW3Pfam:PF01490
PRIDE:F4IUW3ProteinModelPortal:F4IUW3Proteomes:UP000006548Reactome:R-ATH-425393
Reactome:R-ATH-888590RefSeq:NP_850312.1STRING:3702.AT2G39130.1TAIR:AT2G39130
TMHMM:TMhelixUniGene:At.13254UniGene:At.66409UniProt:F4IUW3
Coordinates (TAIR10) chr2:-:16323171..16326744
Molecular Weight (calculated) 60073.00 Da
IEP (calculated) 5.58
GRAVY (calculated) 0.35
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHVPSDQSF YIESEDEDDR KDYVEEDGGS HSDSSDDVYD ENQAHIKPSS YTTAWPQSYR QSIDLYSSVP SPGIGFLGNN SMTRFGSSFL SSGLIRRHTP
101: ESLPTVTKPL LEEQADEQAL PKHRLSSQGL LSPIPSRRGS MRKDEKSSMV SHEIPMSRNS SYGQAVLNGL NVLCGVGILS TPYAAKEGGW LGLMILFVYG
201: LLSFYTGILL RYCLDSESDL ETYPDIGQAA FGTTGRIFVS IVLYLELYAC CVEYIILESD NLSSLYPNAA LSIGGFQLDA RHLFALLTTL AVLPTVWLRD
301: LSVLSYISAG GVIASVLVVL CLFWIGLVDE VGIHSKGTTL NLSTLPVAIG LYGYCYSGHA VFPNIYTSMA KPSQYPAVLL TCFGICTLMY AGVAVMGYTM
401: FGESTQSQFT LNLPQDLIAT KIAVWTTVVN PFTKYALTIS PVAMSLEELI PSRHIRSHWY AIGIRTLLVF STLLVGLAIP FFGLVMSLIG SLLTMLVTLI
501: LPPACFLSIV RRKVTPTQMM LCVLIIIVGA ISSVIGSYSA LSKIVEKLTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)