AT2G39140.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RsuA and RluB/E/F, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G43340.1); Has 12713 Blast hits to 12709 proteins in 2415 species: Archae - 0; Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 2000 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:16330238..16333153 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45110.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.64 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS STHGGVTPQQ LFIPWIVRSD DGTLKLQSQP PARLIHNLAI 101: DATTQNPKKK DKSKKKQPQA TSSSSATTTA SSPASHSEVK PKLSKAARRF YNENFKEQPQ RLSKVLAAAG VASRRTSEEL IFDGKVTVNG ILCNTPQTRV 201: DPSRDIIYVN GNRIPKKLPP KVYFALNKPK GYICSSGEKE IKSAISLFDE YLSSWDKRNP GTPKPRLFTV GRLDVATTGL IVVTNDGDFA QKLSHPSSSL 301: PKEYITTVVG DIHKRHLMAI SEGTMVEGVH CVPDSVELMP KQHDIPRARL RIVVHEGRNH EVRELVKNAG LEVHSLKRVR IGGFRLPSDL GLGKHVELKQ 401: SELKALGWKN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)