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AT3G07330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cellulose-synthase-like C6
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase
Computational
Description (TAIR10)
Cellulose-synthase-like C6 (CSLC6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen tube development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 4986 Blast hits to 4983 proteins in 1463 species: Archae - 182; Bacteria - 3875; Metazoa - 9; Fungi - 97; Plants - 510; Viruses - 14; Other Eukaryotes - 299 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1215eggNOG:ENOG410IGIBEMBL:KJ138836EnsemblPlants:AT3G07330
EnsemblPlants:AT3G07330.1entrez:819921ExpressionAtlas:W8PVG2Gene3D:3.90.550.10
GeneID:819921GO:GO:0016021GO:GO:0016740Gramene:AT3G07330.1
hmmpanther:PTHR32044hmmpanther:PTHR32044:SF14InterPro:IPR029044KEGG:ath:AT3G07330
OMA:CFFDILRPaxDb:W8PVG2Pfam:PF13641Pfam:Q9SRT3
PhylomeDB:W8PVG2ProteinModelPortal:W8PVG2RefSeq:NP_187389.1SMR:W8PVG2
STRING:3702.AT3G07330.1SUPFAM:SSF53448tair10-symbols:ATCSLC06tair10-symbols:ATCSLC6
tair10-symbols:CSLC06tair10-symbols:CSLC6TMHMM:TMhelixUniGene:At.26732
UniGene:At.74958UniProt:Q9SRT3UniProt:W8PVG2
Coordinates (TAIR10) chr3:-:2336121..2338942
Molecular Weight (calculated) 78375.70 Da
IEP (calculated) 9.00
GRAVY (calculated) 0.10
Length 682 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSQNEEFQ QWWNKQRDRN NHDVLYAGDD EAFLTVEIRT PATVDPDKDR IRTRTVRQLS RLYLLKFKQL ASSFLWIGNS FLYLVRTANR RIANDNPPSV
101: SSSARLYRLI KGFLVVVVLL LCFELAAYFK GWHFTPPSVA SAEVAVEVVY AWWLEIRASY LAPPLQSLTN VCIVLFLIQS VDRLVLVLGC FWIKLRRIKP
201: VASMEYPTKL VGEGVRLEDY PMVIVQIPMC NEKEVYQQSI GAVCMLDWPR ERMLVQVLDD SSELDVQQLI KAEVQKWQQR GVRIVYRHRL IRTGYKAGNL
301: KAAMNCEYVK DYEFVAIFDA DFQPPADFLK KTVPHFKGNE ELALVQTRWA FVNKDENLLT RLQNINLSFH FEVEQQVNGV FINFFGFNGT AGVWRIKALE
401: DCGGWLERTT VEDMDIAVRA HLCGWKFIYL NDVKCLCELP ESYEAYKKQQ YRWHSGPMQL FRLCFFDILR SKVSAAKKAN MIFLFFLLRK LILPFYSFTL
501: FCVILPLTMF FPEANLPSWV VCYIPGIMSI LNIIPAPRSF PFIVPYLLFE NTMSVTKFGA MISGLFKFDS SYEWVVTKKL GRSSEADLVA YAESGSLVES
601: TTIQRSSSDS GLTELSKLGA AKKAGKTKRN RLYRTEIALA FILLAASVRS LLSAQGIHFY FLLFQGITFV IVGLDLIGEQ VS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)