AT5G25100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endomembrane protein 70 protein family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G10840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8648374..8651015 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74123.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFYRSSRRL QILGSVILLL SIHVAHSFYL PGVAPQDFEK GDELKVKVNK LTSIKTQLPY SYYSLPFCRP KKIVDSTENL GEVLRGDRIE NAPYSFKMRE 101: AQMCNVLGRV MLDAKSAKAF KEKIDDEYRV NMILDNLPLV VPIERIDPGQ GSPSVVYQLG YHVGLKGQYE GSKEQKYFMH NHLAFTVRYH RDMQTDAARI 201: VGFEVKPYSV KHEYEGQWSE KTRLTTCDPH TKRLVVSSAT PQEVENKKEI IFTYDVDFQE SEVKWASRWD AYLLMSDNQI HWFSIVNSLM IVLFLSGMVA 301: MIMLRTLYRD ISRYNELETQ EEAQEETGWK LVHGDVFRPP ANSDLLCVYV GTGVQCLGMV LVTMIFAMLG FLSPSNRGGL MTAMLLLWVF MGLFAGYASS 401: RLYKMFKGTE WKRIAFRTAF LFPAVVSAIF FVLNALIWGQ KSSGAVPFGT MFALIFLWFG ISVPLVFVGA YLGFKKPPLD DPVKTNKIPR QIPEQAWYMN 501: PIFSILIGGI LPFGAVFIEL FFILTSIWLN QFYYIFGFLF LVFVILMVTC AEITIVLCYF QLCSEDYLWW WRSYLTSGSS AVYLFLYAAF YFFTKLQITK 601: LVSAMLYFGY MLIASYAFFV LTGTIGFYAC LWFTRLIYSS VKID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)