suba logo
AT3G59910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.926
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G44090.2); Has 71 Blast hits to 71 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:10475eggNOG:ENOG410IFNTeggNOG:ENOG4110YQVEMBL:AL138647
EMBL:AY099865EMBL:BT008381EMBL:CP002686EnsemblPlants:AT3G59910
EnsemblPlants:AT3G59910.1entrez:825161Gene3D:1.25.40.20GeneID:825161
Genevisible:Q9M1Y3Gramene:AT3G59910.1hmmpanther:PTHR36024hmmpanther:PTHR36024:SF1
HOGENOM:HOG000239165InParanoid:Q9M1Y3IntAct:Q9M1Y3InterPro:IPR020683
iPTMnet:Q9M1Y3KEGG:ath:AT3G59910OMA:WSESAFEPaxDb:Q9M1Y3
Pfam:Q9M1Y3PhylomeDB:Q9M1Y3PIR:T47815PRIDE:Q9M1Y3
PRO:PR:Q9M1Y3ProteinModelPortal:Q9M1Y3Proteomes:UP000006548RefSeq:NP_191550.1
SMR:Q9M1Y3SUPFAM:SSF48403TAIR:AT3G59910UniGene:At.20090
UniProt:Q9M1Y3
Coordinates (TAIR10) chr3:-:22130779..22133033
Molecular Weight (calculated) 67062.50 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.08
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKEGVCDTI NLSDQMYPDE PFCSEMKTET IASSQKFEGG EGSKVVFSRE APLIGKDSAG TNSGECCGCS AKKLNFKGDD DLVEKENIEQ QKKLNRQERI
101: ELGRLFQGAV TSLDWELAER LIQLADPQTL NDLLCVGLDS VWFLSTKPEF QGITGLIKKI ICHGAHDFTR ATLRTSFLAS CVSACQSRTM SLSDTVTVMA
201: QRLHERLQEC NGDEILKAEA GAKVQKFTEW ALKCIGFHSR CQGAKDRVSQ NSAAEIELQL SAFKMFLDLA GNHLSGRDFT EAFDAACFPL TLFSNSFDPG
301: WASGMSATVI QGLLGMLVEG GADNVNQCFL EASRFGSTEL VRVLLQIAQR NSLDVDVDLA LGFASHYCKI GTMKCLVEEG NAIAFLGPLM RAAERGCMQV
401: VQWFVKRGCR DMELCLALTA ATSSCQVEVA AYLLPRVPPP VLTALSIEIL KAAGERSGGS LQGVEFLLKS DFLGDSTATY SVADSIARSS EDESVPSDLK
501: SFLQEHWSES AFEKGMRESH DDFMNFMRVL KKGESAISLR DLPAPLRVAI AYMPLYRECM KADGRLLSQR LRGQLVEAVR QLQGCAVAVV EVSQTRNLMA
601: VLEHHLTAIF D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)