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AT3G49430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SER/ARG-rich protein 34A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SER/ARG-rich protein 34A (SRp34a); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioGrid:9423eggNOG:COG0724eggNOG:KOG0105EMBL:AC012329
EMBL:AL132964EMBL:BT030067EMBL:CP002686EnsemblPlants:AT3G49430
EnsemblPlants:AT3G49430.1EnsemblPlants:AT3G49430.2EnsemblPlants:AT3G49430.3entrez:824105
ExpressionAtlas:A2RVS6Gene3D:3.30.70.330GeneID:824105Genevisible:A2RVS6
GO:GO:0000166GO:GO:0003723GO:GO:0005681GO:GO:0005730
GO:GO:0005829GO:GO:0006397GO:GO:0008380GO:GO:0016607
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF487HOGENOM:HOG000276234InParanoid:A2RVS6
IntAct:A2RVS6InterPro:IPR000504InterPro:IPR012677iPTMnet:A2RVS6
KEGG:ath:AT3G49430KO:K12890OMA:DIREHEIPaxDb:A2RVS6
Pfam:A2RVS6Pfam:PF00076Pfscan:PS50102PhylomeDB:A2RVS6
PIR:T46221PRIDE:A2RVS6PRO:PR:A2RVS6PROSITE:PS50102
ProteinModelPortal:A2RVS6Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
Reactome:R-ATH-72187RefSeq:NP_001078264.1RefSeq:NP_001190041.1RefSeq:NP_190512.3
SMART:SM00360SMR:A2RVS6STRING:3702.AT3G49430.1SUPFAM:SSF54928
TAIR:AT3G49430tair10-symbols:At-SR34atair10-symbols:SR34atair10-symbols:SRp34a
UniGene:At.35607UniProt:A2RVS6
Coordinates (TAIR10) chr3:+:18332668..18334829
Molecular Weight (calculated) 33601.30 Da
IEP (calculated) 11.39
GRAVY (calculated) -1.13
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)