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AT4G20440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : small nuclear ribonucleoprotein associated protein B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG3168EMBL:AK317021EMBL:AL080253
EMBL:AL161553EMBL:BT004219EMBL:BT005057EMBL:CP002687
EnsemblPlants:AT4G20440EnsemblPlants:AT4G20440.1EnsemblPlants:AT4G20440.2EnsemblPlants:AT4G20440.3
EnsemblPlants:AT4G20440.4entrez:827792GeneID:827792GO:GO:0000398
GO:GO:0003723GO:GO:0005654GO:GO:0005682GO:GO:0005685
GO:GO:0005686GO:GO:0005687GO:GO:0005829GO:GO:0015030
GO:GO:0019013GO:GO:0046540GO:GO:0071004GO:GO:0071013
Gramene:AT4G20440.1Gramene:AT4G20440.2Gramene:AT4G20440.3Gramene:AT4G20440.4
hmmpanther:PTHR10701HOGENOM:HOG000188899IntAct:Q9SUN5InterPro:IPR001163
InterPro:IPR010920InterPro:IPR017131KEGG:ath:AT4G20440KO:K11086
OMA:QGMQMQRPfam:PF01423PhylomeDB:Q9SUN5PIR:T10586
PIRSF:PIRSF037187Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_001031682.1RefSeq:NP_001154258.1RefSeq:NP_193777.1RefSeq:NP_849414.1
SMART:SM00651SMR:Q9SUN5STRING:3702.AT4G20440.1SUPFAM:SSF50182
TAIR:AT4G20440tair10-symbols:smBUniGene:At.3551UniProt:Q9SUN5
Coordinates (TAIR10) chr4:-:11022843..11023616
Molecular Weight (calculated) 27141.50 Da
IEP (calculated) 11.71
GRAVY (calculated) -0.65
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSKSSKML QFINYRMRVT IQDGRQLVGK FMAFDRHMNL VLGDCEEFRK LPPAKGKKIN EEREDRRTLG LVLLRGEEVI SMTVEGPPPP EESRAKAGSA
101: AAVAGPGIGR AAGRGVPTGP LVQAQPGLSG PVRGVGGPAP GMMQPQISRP PQLSAPPIIR PPGQMLPPPP FGGQGPPMGR GPPPPYGMRP PPQQFSGPPP
201: PQYGQRPMIP PPGGMMRGPP PPPHGMQGPP PPRPGMPPAP GGFAPPRPGM PPHNQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)