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AT4G02840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G07590.2); Has 1198 Blast hits to 1197 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 332; Plants - 215; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink).
Protein Annotations
EMBL:AC004044EMBL:AK117672EMBL:AL161495EMBL:AY084707
EMBL:BT028879EMBL:CP002687EnsemblPlants:AT4G02840EnsemblPlants:AT4G02840.1
entrez:828163ExpressionAtlas:Q9SY09GeneID:828163GO:GO:0006396
GO:GO:0019013GO:GO:0030529Gramene:AT4G02840.1hmmpanther:PTHR23338
HOGENOM:HOG000182713IntAct:Q9SY09InterPro:IPR001163InterPro:IPR010920
InterPro:IPR027141PANTHER:PTHR23338Pfam:PF01423PhylomeDB:Q9SY09
PIR:B85036Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_192193.1SMART:SM00651SMR:Q9SY09SUPFAM:SSF50182
TAIR:AT4G02840UniGene:At.27972UniProt:Q9SY09
Coordinates (TAIR10) chr4:+:1264726..1266253
Molecular Weight (calculated) 12750.80 Da
IEP (calculated) 11.81
GRAVY (calculated) -0.47
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLVRFLMKL NNETVSIELK NGTIVHGTIT GVDVSMNTHL KAVKLTLKGK NPVTLDHLSV RGNNIRYYIL PDSLNLETLL VEDTPRIKPK KPTAGKIPAG
101: RGRGRGRGRG RGRGGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)