suba logo
AT5G44500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein associated protein B (TAIR:AT4G20440.4); Has 60118 Blast hits to 30363 proteins in 1233 species: Archae - 62; Bacteria - 7735; Metazoa - 31237; Fungi - 6515; Plants - 7441; Viruses - 1395; Other Eukaryotes - 5733 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG3168EMBL:AB017065EMBL:AK176849
EMBL:AK221574EMBL:AY042856EMBL:AY072470EMBL:CP002688
EnsemblPlants:AT5G44500EnsemblPlants:AT5G44500.1EnsemblPlants:AT5G44500.2entrez:834477
GeneID:834477GO:GO:0003723GO:GO:0005730GO:GO:0019013
GO:GO:0030529Gramene:AT5G44500.1Gramene:AT5G44500.2hmmpanther:PTHR10701
IntAct:Q9FI15InterPro:IPR001163InterPro:IPR010920InterPro:IPR017131
KEGG:ath:AT5G44500KO:K11086OMA:SSGPRYHPfam:PF01423
PhylomeDB:Q9FI15PIRSF:PIRSF037187Proteomes:UP000006548Reactome:R-ATH-72163
Reactome:R-ATH-72165RefSeq:NP_001032011.1RefSeq:NP_199263.1SMART:SM00651
SMR:Q9FI15STRING:3702.AT5G44500.1SUPFAM:SSF50182TAIR:AT5G44500
UniGene:At.7776UniProt:Q9FI15
Coordinates (TAIR10) chr5:+:17927505..17928269
Molecular Weight (calculated) 27001.20 Da
IEP (calculated) 11.31
GRAVY (calculated) -0.71
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMSKSSKML QFINYRMRVT IQDGRQLIGK FMAFDRHMNL VLGDCEEFRK LPPAKGNKKT NEEREERRTL GLVLLRGEEV ISMTVEGPPP PEESRAKSGS
101: VTAVAGPGIG RAAGRGVPTG PLVQAQPGLS GPVRGIGGPA PGMMQPQISR PPQIIRPPGQ MPPQPPFAGQ GGPPPPYGMR PPYPGPPPPQ YGGQQRPMMI
201: PPPGGMMRGP PPPHGMQGPP PSRPGMPPPG GAPMFAPPHP GMPPAPPNHH NQQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)