AT5G43070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : WPP domain protein 1 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary and sufficient for NE targeting of WPP1. RNAi suppression of WPP1 resulted in reduced mitotic activity. | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
WPP domain protein 1 (WPP1); BEST Arabidopsis thaliana protein match is: WPP domain protein 2 (TAIR:AT1G47200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:17289259..17289726 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 16635.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.18 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 155 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAETETESIT TSSPPPISET ENSTTLPTTE TEKNPNPVTI SLRIWPPTQK TRDAVINRLI ETLSTESILS KRFGSLESEE ASSVAKSIED EAYAIASATV 101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)