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AT5G43070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WPP domain protein 1
Curator
Summary (TAIR10)
WPP family members contains an NE targeting domain. This domain, called the WPP domain after a highly conserved Trp-Pro-Pro motif, is necessary and sufficient for NE targeting of WPP1. RNAi suppression of WPP1 resulted in reduced mitotic activity.
Computational
Description (TAIR10)
WPP domain protein 1 (WPP1); BEST Arabidopsis thaliana protein match is: WPP domain protein 2 (TAIR:AT1G47200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19573eggNOG:ENOG410J184eggNOG:ENOG410YXFUEMBL:AB008267
EMBL:AY088852EMBL:BT025708EMBL:CP002688EnsemblPlants:AT5G43070
EnsemblPlants:AT5G43070.1entrez:834323GeneID:834323Genevisible:Q9FMH6
GO:GO:0005640GO:GO:0005794GO:GO:0016363GO:GO:0048527
Gramene:AT5G43070.1hmmpanther:PTHR34362hmmpanther:PTHR34362:SF1HOGENOM:HOG000239842
InParanoid:Q9FMH6IntAct:Q9FMH6InterPro:IPR025265iPTMnet:Q9FMH6
KEGG:ath:AT5G43070OMA:INTTVSPPaxDb:Q9FMH6Pfam:PF13943
Pfam:Q9FMH6PhylomeDB:Q9FMH6PRIDE:Q9FMH6PRO:PR:Q9FMH6
ProteinModelPortal:Q9FMH6Proteomes:UP000006548RefSeq:NP_199121.1SMR:Q9FMH6
STRING:3702.AT5G43070.1TAIR:AT5G43070tair10-symbols:WPP1UniGene:At.30141
UniProt:Q9FMH6
Coordinates (TAIR10) chr5:-:17289259..17289726
Molecular Weight (calculated) 16635.20 Da
IEP (calculated) 4.18
GRAVY (calculated) -0.53
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETETESIT TSSPPPISET ENSTTLPTTE TEKNPNPVTI SLRIWPPTQK TRDAVINRLI ETLSTESILS KRFGSLESEE ASSVAKSIED EAYAIASATV
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)