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AT4G31580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : serine/arginine-rich 22
Curator
Summary (TAIR10)
Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
Computational
Description (TAIR10)
serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
Protein Annotations
BioGrid:14571eggNOG:ENOG4111N8YeggNOG:KOG0107EMBL:AF033586
EMBL:AJ002378EMBL:AL031004EMBL:AL161579EMBL:AY065387
EMBL:AY086525EMBL:AY117206EMBL:CP002687EnsemblPlants:AT4G31580
EnsemblPlants:AT4G31580.1EnsemblPlants:AT4G31580.2entrez:829285Gene3D:3.30.70.330
Gene3D:4.10.60.10GeneID:829285Genevisible:O81126GO:GO:0000166
GO:GO:0000398GO:GO:0003676GO:GO:0005681GO:GO:0005730
GO:GO:0005737GO:GO:0008270GO:GO:0008380GO:GO:0016607
Gramene:AT4G31580.1Gramene:AT4G31580.2hmmpanther:PTHR24012HOGENOM:HOG000276234
InParanoid:O81126IntAct:O81126InterPro:IPR000504InterPro:IPR001878
InterPro:IPR012677iPTMnet:O81126KEGG:ath:AT4G31580KO:K12896
OMA:SHNRGERPaxDb:O81126Pfam:O81126Pfam:PF00076
Pfam:PF00098Pfscan:PS50102Pfscan:PS50158PhylomeDB:O81126
PIR:T05112PIR:T52627PRIDE:O81126PRO:PR:O81126
PROSITE:PS50102PROSITE:PS50158ProteinModelPortal:O81126Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187RefSeq:NP_001078474.1
RefSeq:NP_194886.1SMART:SM00343SMART:SM00360SMR:O81126
STRING:3702.AT4G31580.1SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT4G31580
tair10-symbols:At-RSZ22tair10-symbols:RSZ22tair10-symbols:RSZP22tair10-symbols:SRZ-22
tair10-symbols:SRZ22UniGene:At.23104UniProt:O81126
Coordinates (TAIR10) chr4:+:15306983..15308064
Molecular Weight (calculated) 22459.10 Da
IEP (calculated) 11.93
GRAVY (calculated) -1.45
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRVYVGNLD PRVTERELED EFRAFGVVRS VWVARRPPGY AFLDFEDPRD ARDAIRALDG KNGWRVEQSH NRGERGGGGR GGDRGGGGGG RGGRGGSDLK
101: CYECGETGHF ARECRNRGGT GRRRSKSRSR TPPRYRRSPS YGRRSYSPRA RSPPPPRRRS PSPPPARGRS YSRSPPPYRA REEVPYANGN GLKERRRSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)