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AT4G11080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HMG (high mobility group) box protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG (high mobility group) box protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein (TAIR:AT4G23800.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5648eggNOG:KOG0381EMBL:AF080120EMBL:AJ630485
EMBL:AL049876EMBL:AL161531EMBL:AY133687EMBL:AY568657
EMBL:CP002687EnsemblPlants:AT4G11080EnsemblPlants:AT4G11080.1entrez:826709
Gene3D:1.10.30.10GeneID:826709Genevisible:Q9T012GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006355Gramene:AT4G11080.1
hmmpanther:PTHR13711hmmpanther:PTHR13711:SF228HOGENOM:HOG000238964InParanoid:Q9T012
InterPro:IPR009071iPTMnet:Q9T012KEGG:ath:AT4G11080KO:K09273
ncoils:CoilOMA:RPGINNSPaxDb:Q9T012Pfam:PF00505
Pfam:Q9T012Pfscan:PS50118PhylomeDB:Q9T012PIR:T01926
PIR:T08187PRIDE:Q9T012PRO:PR:Q9T012PROSITE:PS50118
ProteinModelPortal:Q9T012Proteomes:UP000006548RefSeq:NP_192846.1SMART:SM00398
SMR:Q9T012STRING:3702.AT4G11080.1SUPFAM:SSF47095TAIR:AT4G11080
UniGene:At.33587UniProt:Q9T012
Coordinates (TAIR10) chr4:-:6760898..6763272
Molecular Weight (calculated) 52305.70 Da
IEP (calculated) 9.84
GRAVY (calculated) -1.30
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVSSDPAH AKKSRNSRKA LKQKNEIVES SPVSDKGKET KSFEKDLMEM QAMLEKMKIE KEKTEDLLKE KDEILRKKEV EQEKLKTELK KLQKMKEFKP
101: NMTFAFSQSL AQTEEEKKGK KKKKDCAETK RPSTPYILWC KDNWNEVKKQ NPEADFKETS NILGAKWKGI SAEEKKPYEE KYQADKEAYL QVITKEKRER
201: EAMKLLDDEQ KQKTAMELLD QYLHFVQEAE HDNKKKAKKI KDPLKPKQPI SAYLIYANER RAALKGENKS VIEVAKMAGE EWKNLSEEKK APYDQMAKKN
301: KEIYLQEMEG YKRTKEEEAM SQKKEEEEFM KLHKQEALQL LKKKEKTDNI IKKTKETAKN KKKNENVDPN KPKKPTSSYF LFCKDARKSV LEEHPGINNS
401: TVTAHISLKW MELGEEEKQV YNSKAAELME AYKKEVEEYN KTKTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)