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AT4G23800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HMG (high mobility group) box protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG (high mobility group) box protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein (TAIR:AT4G11080.1); Has 73209 Blast hits to 39847 proteins in 2254 species: Archae - 389; Bacteria - 7210; Metazoa - 37524; Fungi - 4636; Plants - 3006; Viruses - 229; Other Eukaryotes - 20215 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5648eggNOG:KOG0381EMBL:AL035394EMBL:AL161560
EMBL:AY074353EMBL:AY096398EMBL:AY125491EMBL:CP002687
EnsemblPlants:AT4G23800EnsemblPlants:AT4G23800.1entrez:828480ExpressionAtlas:Q9SUP7
Gene3D:1.10.30.10GeneID:828480Genevisible:Q9SUP7GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006355hmmpanther:PTHR13711
hmmpanther:PTHR13711:SF228HOGENOM:HOG000238964InParanoid:Q9SUP7InterPro:IPR009071
iPTMnet:Q9SUP7ncoils:CoilOMA:QAMEEYKPaxDb:Q9SUP7
Pfam:PF00505Pfam:Q9SUP7Pfscan:PS50118PhylomeDB:Q9SUP7
PIR:T05612PRIDE:Q9SUP7PRO:PR:Q9SUP7PROSITE:PS50118
ProteinModelPortal:Q9SUP7Proteomes:UP000006548RefSeq:NP_194111.1SMART:SM00398
SMR:Q9SUP7STRING:3702.AT4G23800.1SUPFAM:SSF47095TAIR:AT4G23800
UniGene:At.2572UniGene:At.71059UniProt:Q9SUP7
Coordinates (TAIR10) chr4:+:12390228..12392516
Molecular Weight (calculated) 53233.70 Da
IEP (calculated) 9.95
GRAVY (calculated) -1.32
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNADPAPT KKPRNSRKAL KQKNELVETP PSPVSVKGKS AKSFEQDLME MQTMLEKMKI EKDKTEELLK EKDEILRKKE EELETRDAEQ EKLKVELKKL
101: QKMKEFKPNM TFACGQSSLT QAEQEKANKK KKKDCPETKR PSSSYVLWCK DQWTEVKKEN PEADFKETSN ILGAKWKSLS AEDKKPYEER YQVEKEAYLQ
201: VIAKEKREKE AMKLLEDDQK QRTAMELLDQ YLNFVQEAEQ DNKKKNKKEK DPLKPKHPVS AFLVYANERR AALREENKSV VEVAKITGEE WKNLSDKKKA
301: PYEKVAKKNK ETYLQAMEEY KRTKEEEALS QKKEEEELLK LHKQEALQML KKKEKTDNLI KKEKATKKKK NENVDPNKPK KPASSYFLFS KDERKKLTEE
401: RPGTNNATVT ALISLKWKEL SEEEKQVYNG KAAKLMEAYK KEVEAYNKKS AATTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)