suba logo
AT1G22030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.504
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJG3eggNOG:ENOG410YCAIEMBL:AC069252EMBL:AK118146
EMBL:BT008529EMBL:CP002684EnsemblPlants:AT1G22030EnsemblPlants:AT1G22030.1
entrez:838808GeneID:838808Gramene:AT1G22030.1hmmpanther:PTHR31509
hmmpanther:PTHR31509:SF2InterPro:IPR008511KEGG:ath:AT1G22030ncoils:Coil
OMA:GILMHEYPfam:PF05633PhylomeDB:Q9LM58PIR:C86353
Proteomes:UP000006548RefSeq:NP_564155.1TAIR:AT1G22030UniGene:At.41626
UniProt:Q9LM58
Coordinates (TAIR10) chr1:-:7759337..7760415
Molecular Weight (calculated) 37530.80 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.36
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPSCANSVN GFYSFLNRSM EDLERVYLSN NFMSVHFLQR ALCLLRTSHS HLTLLVQKLQ LPVGDKWLDE YMDESSKLWE ACLVIKSAVS SVENFSSAGI
101: SIASTLDRRL SPQLSRQVIR AISGCRREAI GIEEENRALM ENRVQRFPFW SEQTSATAME SSTKLQNGFS GFRGVLYATR NMSSLLLMVL MNGLVYCFPG
201: DAATQTQTQI TQTQSQVGGF AGAMGRLQQR VAAEVGRMGI RKGILMHEYR RSKAALEELK AELERRFCGG GGGGGEREEE EEDERELRER VENLKGYFGN
301: LRNGTESIVA QIDDFFDEIV EGRKKLLDFC SHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)