suba logo
AT1G79760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : downstream target of AGL15-4
Curator
Summary (TAIR10)
Identified as target of the AGL15 binding motif CArG.
Computational
Description (TAIR10)
downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKAYeggNOG:ENOG410YGHTEMBL:AC011717EMBL:AK176480
EMBL:BT012650EMBL:CP002684EnsemblPlants:AT1G79760EnsemblPlants:AT1G79760.1
entrez:844315Gene3D:2.60.120.330GeneID:844315GO:GO:0016021
Gramene:AT1G79760.1hmmpanther:PTHR34945hmmpanther:PTHR34945:SF3InterPro:IPR027443
KEGG:ath:AT1G79760OMA:AWAPPVIPIR:F96828Proteomes:UP000006548
RefSeq:NP_178094.1STRING:3702.AT1G79760.1SUPFAM:SSF51197TAIR:AT1G79760
tair10-symbols:DTA4TMHMM:TMhelixUniGene:At.34052UniProt:Q9CA84
Coordinates (TAIR10) chr1:+:30012054..30013042
Molecular Weight (calculated) 33672.60 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.20
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVSSPDFRA PPPSPVASSR RASFTANEDV LSEFLDKCGR VPNLVLPDKV FPKHTFLLNP PTFDFHRLDS LSALLDAIAT IGCFQLVNHG VPEAMVKAAM
101: DKTIFHDETE EFVFNKDINA DDHTACYSDL RELMGEAERI GKAVREKLGA GGRSQKEGVG VCYVKRHNIK NESKEEAIRM LLRGYDERHS LCLNFCHAEF
201: HVYSKRGWVS FSPRPDAVIV TIGDQGWSGR FKGVVGRPLL YKSDLHHNLI SISFLYTSTT TLHNTSRKIT KRTKKKTISL FQQLLFALFL TLLFPFLLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)