AT2G47860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19599979..19602088 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71002.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVVTVPESN KQSVAAKRAF RPSSSIRHTP QWPVSDVTSD LTIEVGSATF SLHKFPLVSR SGRIRKLVLE SKDTNLNLAA VPGGSESFEL AAKFCYGVGV 101: QYNSSNIAAL RCVAHYLEMT EDLSEKNLEA RTEAYLKDSI FNDISNSITV LHSCERLLPV AEEINLVGRL VNAIAVNACK EQLASGLLKL DQSFSCGVPE 201: TAKPCDWWGR SLPILKLDFF QRVLSAMKSK GLNHDIISDI LMSYARKSLQ IIREPNLVKS DSDLQRKQRI VLEAVVGLLP TQANKSSIPI SFLSSLLKTA 301: IGSGTSVSCR SDLERRISHL LDQAILEDIL IPANIGAMYD TDSVQRIFSM FLNLDECEYR DDDDDEEDAV DESEMAMYDF EGAESPKQSS IFKVSKLMDS 401: YLAEVALDSS LPPSKFIALA ELLPDHARVV CDGLYRAVDI FLKVHPHMKD SERYRLCKTV SCKKLSQDAS SHAAQNERLP VQIAVQVLFY EQTRLKNAMT 501: SGGGTGGSNQ SQFFLFPNRS GSGMASGAIS PRDNYASVRR ENRELRLEVA RMRMRLTDLE KDHVSMKRDF VKPQSRRRRY GMLRKLSRGL NKLNAIVLRF 601: RSSQSVASSG KKHTEEKTNS ERRFMFQKRR CHSVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)