suba logo
AT5G60490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan-protein 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan-protein 12 (FLA12); LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan-protein 11 (TAIR:AT5G03170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUF1eggNOG:ENOG41106XVEMBL:AB011483EMBL:AF410335
EMBL:AY085457EMBL:BT000530EMBL:CP002688EnsemblPlants:AT5G60490
EnsemblPlants:AT5G60490.1entrez:836170Gene3D:2.30.180.10GeneID:836170
Genevisible:Q8LEE9GO:GO:0005886GO:GO:0009834GO:GO:0031225
Gramene:AT5G60490.1hmmpanther:PTHR32077hmmpanther:PTHR32077:SF10HOGENOM:HOG000237523
InParanoid:Q8LEE9InterPro:IPR000782KEGG:ath:AT5G60490OMA:NDKSSAM
PaxDb:Q8LEE9Pfam:PF02469Pfam:Q8LEE9Pfscan:PS50213
PhylomeDB:Q8LEE9PRIDE:Q8LEE9PRO:PR:Q8LEE9PROSITE:PS50213
ProteinModelPortal:Q8LEE9Proteomes:UP000006548RefSeq:NP_200857.1SMART:SM00554
STRING:3702.AT5G60490.1SUPFAM:SSF82153TAIR:AT5G60490tair10-symbols:FLA12
UniGene:At.22397UniProt:Q8LEE9
Coordinates (TAIR10) chr5:-:24325916..24326665
Molecular Weight (calculated) 26368.20 Da
IEP (calculated) 4.87
GRAVY (calculated) 0.03
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MEHSLIILLF TVLLLLTTTP GILSQPSPAV APAPPGPTNV TKILEKAGQF TVFIRLLKST GVANQLYGQL NNSDNGITIF APSDSSFTGL KAGTLNSLTD
101: EQQVELIQFH VIPSYVSSSN FQTISNPLRT QAGDSADGHF PLNVTTSGNT VNITSGVTNT TVSGNVYSDG QLAVYQVDKV LLPQQVFDPR PPAPAPAPSV
201: SKSKKKKDDS DSSSDDSPAD ASFALRNVGS VCDAVSFCVM SVMLAWFYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)