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AT5G01190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : laccase 10
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational
Description (TAIR10)
laccase 10 (LAC10); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 9531 Blast hits to 8327 proteins in 1383 species: Archae - 24; Bacteria - 3756; Metazoa - 439; Fungi - 3375; Plants - 1571; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01190-MONOMEREC:1.10.3.2eggNOG:COG2132eggNOG:KOG1263
EMBL:AL137189EMBL:BT014855EMBL:CP002688EnsemblPlants:AT5G01190
EnsemblPlants:AT5G01190.1entrez:831697Gene3D:2.60.40.420GeneID:831697
Genevisible:Q6ID18GO:GO:0005507GO:GO:0009809GO:GO:0016722
GO:GO:0046274GO:GO:0048046GO:GO:0052716Gramene:AT5G01190.1
hmmpanther:PTHR11709hmmpanther:PTHR11709:SF93HOGENOM:HOG000241916InParanoid:Q6ID18
InterPro:IPR001117InterPro:IPR002355InterPro:IPR008972InterPro:IPR011706
InterPro:IPR011707InterPro:IPR017761InterPro:IPR033138KEGG:ath:AT5G01190
KO:K05909OMA:PTIYANEPaxDb:Q6ID18Pfam:PF00394
Pfam:PF07731Pfam:PF07732Pfam:Q6ID18PhylomeDB:Q6ID18
PIR:T45959PRIDE:Q6ID18PRO:PR:Q6ID18PROSITE:PS00079
PROSITE:PS00080ProteinModelPortal:Q6ID18Proteomes:UP000006548RefSeq:NP_195739.2
scanprosite:PS00079scanprosite:PS00080SMR:Q6ID18STRING:3702.AT5G01190.1
SUPFAM:SSF49503TAIR:AT5G01190tair10-symbols:LAC10TIGRfam:TIGR03389
TIGRFAMs:TIGR03389TMHMM:TMhelixUniGene:At.33933UniGene:At.67929
UniProt:Q6ID18
Coordinates (TAIR10) chr5:+:72392..74612
Molecular Weight (calculated) 61300.80 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.04
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFPIRILVL FALLAFPACV HGAIRKYTFN VVTKQVTRIC STKQIVTVNG KFPGPTIYAN EDDTILVNVV NNVKYNVSIH WHGIRQLRTG WADGPAYITQ
101: CPIKPGHSYV YNFTVTGQRG TLWWHAHVLW LRATVHGAIV ILPKLGLPYP FPKPHREEVI ILGEWWKSDT ETVVNEALKS GLAPNVSDAH VINGHPGFVP
201: NCPSQGNFKL AVESGKTYML RLINAALNEE LFFKIAGHRF TVVEVDAVYV KPFNTDTILI APGQTTTALV SAARPSGQYL IAAAPFQDSA VVAVDNRTAT
301: ATVHYSGTLS ATPTKTTSPP PQNATSVANT FVNSLRSLNS KTYPANVPIT VDHDLLFTVG LGINRCHSCK AGNFSRVVAA INNITFKMPK TALLQAHYFN
401: LTGIYTTDFP AKPRRVFDFT GKPPSNLATM KATKLYKLPY NSTVQVVLQD TGNVAPENHP IHLHGFNFFV VGLGTGNYNS KKDSNKFNLV DPVERNTVGV
501: PSGGWAAIRF RADNPGVWFM HCHLEVHTTW GLKMAFLVEN GKGPNQSIRP PPSDLPKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)