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AT1G72230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cupredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cupredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G22480.1); Has 1425 Blast hits to 1386 proteins in 65 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1420; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0AQeggNOG:ENOG410YQ18EMBL:AC067754EMBL:AY052214
EMBL:AY085679EMBL:CP002684EnsemblPlants:AT1G72230EnsemblPlants:AT1G72230.1
entrez:843555Gene3D:2.60.40.420GeneID:843555GO:GO:0009055
GO:GO:0031225Gramene:AT1G72230.1hmmpanther:PTHR33021hmmpanther:PTHR33021:SF64
HOGENOM:HOG000237627InterPro:IPR003245InterPro:IPR008972InterPro:IPR028871
KEGG:ath:AT1G72230OMA:ASHPVEWPfam:PF02298Pfscan:PS51485
PhylomeDB:Q9C7T2PIR:H96745ProDom:PD003122ProMEX:Q9C7T2
PROSITE:PS00196PROSITE:PS51485Proteomes:UP000006548RefSeq:NP_177368.1
scanprosite:PS00196SMR:Q9C7T2SUPFAM:SSF49503TAIR:AT1G72230
TMHMM:TMhelixUniGene:At.17883UniProt:Q9C7T2
Coordinates (TAIR10) chr1:+:27188287..27189093
Molecular Weight (calculated) 18371.80 Da
IEP (calculated) 6.07
GRAVY (calculated) 0.25
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLCTLVGF LVIIFFNVFA PASSASHPVE WSLGKDYSSL ATGKSFAVGD TIVFNYGAGH TVDEVSESDY KSCTLGNAIS SDSSGTTSIA LKTPGPHYFI
101: CGIPGHCTGG MKLSVIVPAA SSGGSTGDGT TDKNTPVQDG KTTPSEGKKA SPSASATAVL KPLDALVVTC VVALMYTLAL P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)