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AT3G06370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19306843 (2009): plant-type vacuole plant-type vacuole lumen
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sodium hydrogen exchanger 4
Curator
Summary (TAIR10)
member of Sodium proton exchanger family
Computational
Description (TAIR10)
sodium hydrogen exchanger 4 (NHX4); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: response to salt stress, sodium ion transport; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 2 (TAIR:AT3G05030.1); Has 5892 Blast hits to 5885 proteins in 1663 species: Archae - 61; Bacteria - 4002; Metazoa - 840; Fungi - 131; Plants - 419; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
BioGrid:5146eggNOG:COG0025eggNOG:KOG1965EMBL:AC011623
EMBL:BT003855EMBL:CP002686EnsemblPlants:AT3G06370EnsemblPlants:AT3G06370.1
entrez:819811GeneID:819811Genevisible:Q84WG1GO:GO:0005774
GO:GO:0005886GO:GO:0006885GO:GO:0009651GO:GO:0015385
GO:GO:0016021GO:GO:0055075Gramene:AT3G06370.1hmmpanther:PTHR10110
hmmpanther:PTHR10110:SF117HOGENOM:HOG000272718InParanoid:Q84WG1InterPro:IPR004709
InterPro:IPR006153InterPro:IPR018422InterPro:IPR029872KEGG:ath:AT3G06370
OMA:FASYQARPANTHER:PTHR10110PANTHER:PTHR10110:SF117PaxDb:Q84WG1
Pfam:PF00999Pfam:Q84WG1PhylomeDB:Q84WG1PRIDE:Q84WG1
PRINTS:PR01084PRO:PR:Q84WG1ProteinModelPortal:Q84WG1Proteomes:UP000006548
RefSeq:NP_187288.2STRING:3702.AT3G06370.1TAIR:AT3G06370tair10-symbols:ATNHX4
tair10-symbols:NHX4TMHMM:TMhelixUniGene:At.40533UniProt:Q84WG1
Coordinates (TAIR10) chr3:-:1930899..1933515
Molecular Weight (calculated) 55609.60 Da
IEP (calculated) 7.43
GRAVY (calculated) 0.59
Length 503 amino acids
Sequence (TAIR10)
(BLAST)
001: MVIGLSTMLE KTEALFASDH ASVVSMNLFV ALLCACIVLG HLLEETRWMN ESITALIIGS CTGIVILLIS GGKSSRILVF SEDLFFIYLL PPIIFNAGFQ
101: VKKKQFFRNF MTIMLFGAIG TLISFVIISF GAKHLFEKMN IGDLTIADYL AIGAIFSATD SVCTLQVLNQ DETPLLYSLV FGEGVVNDAT SVVLFNAIQR
201: FDLTNINSAI ALEFAGNFFY LFILSTALGV AAGLLSAFVI KKLYIGRHST DREVALMMLL AYLSYMLAEL FHLSSILTVF FCGIVMSHYT WHNVTDKSKV
301: TTKHTFAAMS FLAEIFIFLY VGMDALDIEK WDVVRNSPGQ SIGVSSILLG LILLGRAAFV FPLSFLSNLT KSSPDEKIDL KKQVTIWWAG LMRGAVSMAL
401: AYNQFTTSGH TKVLGNAIMI TSTITVVLFS TVVFGLLTKP LVKHLQPSSK QSSTTALQIT LRSSFHDPIL HEPLLSTQGQ SEYDPEQHVS FRMFWKSPSR
501: FTH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)