suba logo
AT1G14190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.409
plasma membrane 0.377
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glucose-methanol-choline (GMC) oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT1G14185.1); Has 12034 Blast hits to 11141 proteins in 1120 species: Archae - 6; Bacteria - 4075; Metazoa - 1036; Fungi - 1877; Plants - 336; Viruses - 6; Other Eukaryotes - 4698 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14190-MONOMEReggNOG:COG2303eggNOG:KOG1238EMBL:AC007576
EMBL:CP002684EnsemblPlants:AT1G14190EnsemblPlants:AT1G14190.1entrez:837979
Gene3D:3.50.50.60GeneID:837979GO:GO:0016614GO:GO:0050660
Gramene:AT1G14190.1hmmpanther:PTHR11552hmmpanther:PTHR11552:SF140HOGENOM:HOG000239349
InterPro:IPR000172InterPro:IPR007867InterPro:IPR023753KEGG:ath:AT1G14190
OMA:FMPELTQPfam:PF00732Pfam:PF05199PhylomeDB:Q9XI68
PIR:F86275PROSITE:PS00624Proteomes:UP000006548RefSeq:NP_172871.1
scanprosite:PS00624SMR:Q9XI68STRING:3702.AT1G14190.1SUPFAM:SSF51905
SUPFAM:SSF54373TAIR:AT1G14190UniGene:At.51605UniProt:Q9XI68
Coordinates (TAIR10) chr1:+:4852802..4854307
Molecular Weight (calculated) 55141.50 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.28
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MPYMTTDAKE VSGKSFDYIV VGGGTAGCSL AATLSEKYSV LVIERGGSPF GDPLVEERKY FGYSLLNTDE YSSVAQSFTS VDGIENYRGR VLGGSSAING
101: GFYSRASDEF VKKAGWDKGL VQESYKWVES KVVFMPELTQ WQSVVQFGFL EAGFYPYNGY SLEHTQGTKI GGSIYDQCGK RHTSADLLGF GKPNCITVLL
201: NTTVKSIIFD SSNKTRAVGV RFMESDGNSS KSYKVHVEQH RGEVILAAGA LGSPQILLLS GIGPENHLKD FDIPVIVNLK EVGRKMSDNP AISLLVDRFS
301: QNRTLEPPQV AAIAEGYKFI LESEVLPTDI TTTRISIAAK IAFPKSKGRL KLNSTNPREN PSVKFNYLEN KADLDACLEM VLHLQHVARS ETVTFFLGTQ
401: AHDKLVAGDE ELKSFCIKNV RTYYHYHGGC VVGSVVDEEY KVNGVKRLRV VDGSTFEESP GTNPMATVLM LGRYQGIKIL KEREEQEDTF LSPQGSPQPQ
501: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)