AT1G47670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LYS/HIS transporter 7 (TAIR:AT4G35180.1); Has 1570 Blast hits to 1567 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 174; Fungi - 154; Plants - 1118; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17536834..17539486 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57122.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDERPETELI SIPATPRVST PEILTPSGQR SPRPATKPSS ATWTPTSFIS PRFLSPIGTP MKRVLVNMKG YLEEVGHLTK LNPQDAWLPI TESRNGNAHY 101: AAFHNLNAGV GFQALVLPVA FAFLGWSWGI LSLTIAYCWQ LYTLWILVQL HEAVPGKRYN RYVELAQAAF GERLGVWLAL FPTVYLSAGT ATALILIGGE 201: TMKLFFQIVC GPLCTSNPLT TVEWYLVFTS LCIVLSQLPN LNSIAGLSLI GAVTAITYST MVWVLSVSQP RPATISYEPL SMPSTSGSLF AVLNALGIIA 301: FAFRGHNLVL EIQSTMPSTF KHPAHVPMWR GAKISYFLIA LCIFPISIGG FWAYGNLMPS GGMLAALYAF HIHDIPRGLL ATAFLLVVFS CLSSFQIYSM 401: PAFDSFEAGY TSRTNKPCSI WVRSGFRVFF GFVSFFIGVA LPFLSSLAGL LGGLTLPVTF AYPCFMWVLI KKPAKYSFNW YFHWGLGWLG VAFSLAFSIG 501: GIWSMVTNGL KLKFFKPPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)