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AT5G50150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.726
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of Unknown Function (DUF239)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHECeggNOG:ENOG4111S54EMBL:AB024031EMBL:AB026650
EMBL:AF446872EMBL:AY052196EMBL:CP002688EnsemblPlants:AT5G50150
EnsemblPlants:AT5G50150.1entrez:835080GeneID:835080Gramene:AT5G50150.1
hmmpanther:PTHR31589hmmpanther:PTHR31589:SF20HOGENOM:HOG000237949InterPro:IPR004314
InterPro:IPR025521KEGG:ath:AT5G50150OMA:CPIGSIPPfam:PF03080
Pfam:PF14365PhylomeDB:Q9FG96Proteomes:UP000006548RefSeq:NP_199826.1
TAIR:AT5G50150UniGene:At.26440UniProt:Q9FG96
Coordinates (TAIR10) chr5:-:20402444..20406375
Molecular Weight (calculated) 47036.50 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.43
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSSSST TSTITSKFIG LMLLLSLQLD LLLGSAIHLK NQTSFRPNRE IQKLRRVEAY LSKINKPSIK TIHSPDGDVI ECVPSHLQPA FDHPQLQGQK
101: PLDSPYRPSK GNETTYEESF NQLWSMSGES CPIGSIPIRK TTKNDVLRAN SVRRFGRKLR RPIRRDSSGG GHEHAVVFVN GEQYYGAKAS INVWAPRVTD
201: AYEFSLSQIW LISGSFGHDL NTIEAGWQVS PELYGDNYPR FFTYWTTDAY QATGCYNLLC SGFVQTNNKI AIGAAISPRS SYNGRQFDIG LMIWKDPKHG
301: HWWLELGNGL LVGYWPAFLF SHLRSHASMV QFGGEVVNSR SSGAHTGTQM GSGHFADEGF EKAAYFRNLQ VVDWDNNLLP LKNLHVLADH PACYDIRQGK
401: NNVWGTYFYY GGPGRNPRCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)