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AT1G27660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G61660.3); Has 1680 Blast hits to 1555 proteins in 71 species: Archae - 0; Bacteria - 6; Metazoa - 95; Fungi - 29; Plants - 1158; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG1CeggNOG:ENOG410YI9BEMBL:AC012375EMBL:BX814188
EMBL:CP002684EnsemblPlants:AT1G27660EnsemblPlants:AT1G27660.1entrez:839658
Gene3D:4.10.280.10GeneID:839658GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT1G27660.1hmmpanther:PTHR16223
hmmpanther:PTHR16223:SF11HOGENOM:HOG000095222InParanoid:Q9SFZ3InterPro:IPR011598
KEGG:ath:AT1G27660OMA:YMKSSRNPaxDb:Q9SFZ3Pfam:Q9SFZ3
Pfscan:PS50888PhylomeDB:Q9SFZ3PIR:F86401PRIDE:Q9SFZ3
PRO:PR:Q9SFZ3PROSITE:PS50888ProteinModelPortal:Q9SFZ3Proteomes:UP000006548
RefSeq:NP_174087.1SMR:Q9SFZ3SUPFAM:SSF47459TAIR:AT1G27660
UniGene:At.49924UniProt:Q9SFZ3
Coordinates (TAIR10) chr1:+:9621701..9625666
Molecular Weight (calculated) 49559.70 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.63
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN EMLNTRAHNN NNNNNTSECM SLSSIHNHSL IQQQDFPLQW
101: PHDQSSYQHH EGLLKIKEEL SSSTISDHQE GISKFTDMLN SPVITNYLKI NEHKDYTEKL LLKSMSSGFP INGDYGSSLP SSSSSSSPSS QSHRGNFSQI
201: YPSVNISSLS ESRKMSMDDM SNISRPFDIN MQVFDGRLFE GNVLVPPFNA QEISSLGMSR GSLPSFGLPF HHHLQQTLPH LSSSPTHQME MFSNEPQTSE
301: GKRHNFLMAT KAGENASKKP RVESRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF LQSQIETLSV PYMRASRNRP GKASQLVSQS
401: QEGDEEETRD LRSRGLCLVP LSCMTYVTGD GGDGGGGVGT GFWPTPPGFG GGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)