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AT1G69580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXYDeggNOG:ENOG4111ACNEMBL:CP002684EnsemblPlants:AT1G69580
EnsemblPlants:AT1G69580.1entrez:843294ExpressionAtlas:F4I274Gene3D:1.10.10.60
GeneID:843294GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT1G69580.1hmmpanther:PTHR31499hmmpanther:PTHR31499:SF11
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR025756
ncoils:CoilPaxDb:F4I274Pfam:PF00249Pfam:PF14379
PRIDE:F4I274ProteinModelPortal:F4I274Proteomes:UP000006548RefSeq:NP_177117.2
SMR:F4I274SUPFAM:SSF46689TAIR:AT1G69580TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.52449UniProt:F4I274
Coordinates (TAIR10) chr1:+:26172127..26173612
Molecular Weight (calculated) 37898.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.64
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MCLLMEINNN ANNTNTTIDN HKAKMSLVLS TDAKPRLKWT CDLHHKFIEA VNQLGGPNKA TPKGLMKVME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE
101: VSSASENQEV ESKNDSRDLR GCSVTEENSN PAKEGLQITE ALQMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLMKA QQTLAGYSSS NLGMDFARTE
201: LSRLASMVNR GCPSTSFSEL TQVEEEEEGF LWYKKPENRG ISQLRCSVES SLTSSETSET KLDTDNNLNK SIELPLMEIN SEVMKGKKRS INDVVCVEQP
301: LMKRAFGVDD DEHLKLSLNT YKKDMEACTN IGLGFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)