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AT4G34560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.906
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J18EeggNOG:ENOG410Z6ZDEMBL:AY099632EMBL:BT002149
EMBL:CP002687EnsemblPlants:AT4G34560EnsemblPlants:AT4G34560.1entrez:829608
GeneID:829608GO:GO:0016021Gramene:AT4G34560.1hmmpanther:PTHR33640
hmmpanther:PTHR33640:SF3HOGENOM:HOG000090851InterPro:IPR025520KEGG:ath:AT4G34560
OMA:RRINDGCPfam:PF14364PhylomeDB:Q8L623Proteomes:UP000006548
RefSeq:NP_195182.2TAIR:AT4G34560TMHMM:TMhelixUniGene:At.31493
UniProt:Q8L623
Coordinates (TAIR10) chr4:+:16507923..16508588
Molecular Weight (calculated) 25284.90 Da
IEP (calculated) 10.66
GRAVY (calculated) -0.37
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPIKFQHLK MEKSRGILNF QAIRSFTSLF RLFELLLLVI LISKLSFPSV KISGDIFKEA AVFLVSPRFV FFIGNAIVIT LLAKSGRYSS SHEPSKTATE
101: AASNDLYQEF LHKSEKKKPV VYATKTEQLK KPSGGKRVSF GRSQSHKAFE AVKPLESTNG EKNMKRYVSE KHMRVCDSDK KVVVRVKKPE DGMSNEQFRT
201: KIEAFIARQK RIQKDEEHLI I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)