AT2G40900.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G56620.1); Has 4454 Blast hits to 4441 proteins in 784 species: Archae - 39; Bacteria - 2478; Metazoa - 2; Fungi - 0; Plants - 1222; Viruses - 0; Other Eukaryotes - 713 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:17063396..17065514 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 43051.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.54 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGLRMSESAK PYFAMVCLQF GYAGMNLVTK TVLDRGMSHY VLVAYRNAFA TAAIAPFALL SERKVRSKMT FPIFMRIFLL ALLGPVIDQN LYYIGLKLTS 101: PTFSSAVSNI VPAITIILAT LFRMEKVEMR KVRCLVKVMG TLVTVVGSIL MIFYKGPFIN FFRSHLTAAS SPPTADYLKA AVFLLLASLS WASFFVLQAA 201: TLKKYSAHLS MSTMVCFMGT LQSLALAFVM EHNPSALNIG FDMNLLASAY AGIMSSSIAY YVQGLMMQRK GPVFVTAFNP LIVVIVSIMS FFVLGQGIYL 301: GGVIGVVVLM VGVYAVLWGK HVDDDGEETR HEDNVVAVKC CSGNNGLTIM PKIDEADEED VETGKATSEK ESSVPEVVVV VFCSENVHSV SRPN |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)