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AT2G24720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : glutamate receptor 2.2
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 2.2 (GLR2.2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.3 (TAIR:AT2G24710.1); Has 5780 Blast hits to 5641 proteins in 724 species: Archae - 68; Bacteria - 1382; Metazoa - 3425; Fungi - 0; Plants - 653; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).
Protein Annotations
BioGrid:2360eggNOG:ENOG410XQQVeggNOG:KOG1052EMBL:AC007266
EMBL:AY072068EMBL:CP002685EnsemblPlants:AT2G24720EnsemblPlants:AT2G24720.1
entrez:817008GeneID:817008Genevisible:Q9SHV1GO:GO:0004970
GO:GO:0005262GO:GO:0005622GO:GO:0005886GO:GO:0006816
GO:GO:0008066GO:GO:0016021GO:GO:0019722GO:GO:0070588
GO:GO:0071230Gramene:AT2G24720.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF242
HOGENOM:HOG000239558InParanoid:Q9SHV1InterPro:IPR001320InterPro:IPR001638
InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082iPTMnet:Q9SHV1
KEGG:ath:AT2G24720KO:K05387MINT:MINT-8068756OMA:EMPENSN
PaxDb:Q9SHV1Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q9SHV1PhylomeDB:Q9SHV1PIR:B84640PIRSF:PIRSF037090
PRIDE:Q9SHV1PRO:PR:Q9SHV1ProteinModelPortal:Q9SHV1Proteomes:UP000006548
RefSeq:NP_180048.1SMART:SM00079SMR:Q9SHV1STRING:3702.AT2G24720.1
SUPFAM:SSF53822SUPFAM:SSF53850TAIR:AT2G24720tair10-symbols:ATGLR2.2
tair10-symbols:GLR2.2TMHMM:TMhelixUniGene:At.39113UniProt:Q9SHV1
Coordinates (TAIR10) chr2:-:10522783..10525840
Molecular Weight (calculated) 102852.00 Da
IEP (calculated) 7.68
GRAVY (calculated) 0.03
Length 920 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNSKLFFRF LFLFFFFCLE SSRGQDNGKT QVNIGVVSDV GTSYPDVAML CINMSLADFY SSRPQFQTRL VVNVGDSKND VVGAATAAID LIKNKQVKAI
101: LGPWTSMQAH FLIEIGQKSR VPVVSYSATS PSLTSLRSPY FFRATYEDSS QVHAIKAIIK LFGWREVVPV YIDNTFGEGI MPRLTDSLQD INVRIPYRSV
201: IPLNATDQDI SVELLKMMNM PTRVFIVHMS SSLASTVFIK AKELGLMKPG YVWILTNGVM DGLRSINETG IEAMEGVLGI KTYIPKSKDL ETFRSRWKRR
301: FPQMELNVYG LWAYDATTAL AMAIEDAGIN NMTFSNVDTG KNVSELDGLG LSQFGPKLLQ TVSTVQFKGL AGDFHFVSGQ LQPSVFEIVN MIGTGERSIG
401: FWTEGNGLVK KLDQEPRSIG TLSTWPDHLK HIIWPGEAVS VPKGWEIPTN GKKLRIGVPK RIGFTDLVKV TRDPITNSTV VKGFCIDFFE AVIQAMPYDV
501: SYEFFPFEKP NGEPAGNHND LVHQVYLGQF DAVVGDTTIL ANRSSFVDFT LPFMKSGVGL IVPLKDEVKR DKFSFLKPLS IELWLTTLVF FFLVGISVWT
601: LEHRVNSDFR GPANYQASTI FWFAFSTMVF APRERVLSFG ARSLVVTWYF VLLVLTQSYT ASLASLLTSQ QLNPTITSMS SLLHRGETVG YQRTSFILGK
701: LNETGFPQSS LVPFDTAEEC DELLKKGPKN GGVAAAFLGT PYVRLFLGQY CNTYKMVEEP FNVDGFGFVF PIGSPLVADV SRAILKVAES PKAVELEHAW
801: FKKKEQSCPD PVTNPDSNPT VTAIQLGVGS FWFLFLVVFV VCVLALGKFT FCFLWKTKGK DLWKEFLKRD TDSYINDIEK CLCSQEMPEN SNKATNQTNY
901: GMELRVRNIV QVNQTDPDCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)