AT5G43180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF599 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17336425..17337816 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26540.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.49 | ||||||||||||||||||||||||||||
| Length | 239 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRMKIDTDSI VVPLSLLIAV GYHVFLWNTF KHNPSRTSLG IDSSKRKSWF RDIKEGDDKT GMLAVQSLRN KKMVTILTAT IAILIFLSLA AVTNNAFKAS 101: HLITAADDIF FGSQNAKIFV LKYASASLLL AASFFFSSIA LSYLMDAIFL INAIAKKHEG DCDCAYDITG TSSFREYTRL VLERGFFMAM VGNRVMCVSI 201: PLLLWMFGPL PVLASSLGLV WVLYQFDFPS TAKISVCKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)