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AT2G28780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJA5eggNOG:ENOG4111M1QEMBL:BT004090EMBL:BT008605
EMBL:CP002685EnsemblPlants:AT2G28780EnsemblPlants:AT2G28780.1entrez:817427
GeneID:817427GO:GO:0016021Gramene:AT2G28780.1hmmpanther:PTHR30509
hmmpanther:PTHR30509:SF7HOGENOM:HOG000239132KEGG:ath:AT2G28780ncoils:Coil
OMA:ISSICTTPfam:PF13515PhylomeDB:Q84W96Proteomes:UP000006548
RefSeq:NP_180444.2STRING:3702.AT2G28780.1TAIR:AT2G28780TMHMM:TMhelix
UniGene:At.27789UniProt:Q84W96
Coordinates (TAIR10) chr2:-:12340099..12343281
Molecular Weight (calculated) 87989.40 Da
IEP (calculated) 8.75
GRAVY (calculated) 0.10
Length 796 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMTERGRAM WRTCLASAFR TALACTIVGS ATLYGPEWIN RHVAFPAFSY VTVILIITDA TLGDTLRGCW LALYATCQSV GPAIVTLKLI RPARLTAETT
101: ALAAALAAFV VVLPNSSTHL VAKRIALGQI VLIYVIGYIK GAKTDPVMHP LQVAASTALG VVACVLALLV PLPRLATCEV KQSCKELGQN VTTRVKLYMK
201: AFCSDDSMSA TASVSQARVL ARSSSKLYQT LKRYQPSMTW ERLPFKIWRW QNVNDNKGEK LQSMEIALRG MEMVVASKSP IPSSLLAGEV KEDLKNIQER
301: VILSIKRVNN SSQPSVTPES DPKNPDECLQ TLQEIPGTPQ DLPFYFFLFC IRLLETIIIA KPEENKVKVL ENKFKTRSWI SDWDSKKIMP ALKLSLSLGL
401: AILLGSMFSK PNGYWAGLPV AVSFAAAREA TFKVTNVKAQ GTVIGTVYGV MGCFVFQKFL TVRFLSLLPW FLFSSFLSRS KMYGQAGGIS AAIGAVLILG
501: RKNFGPPSEF AIERIIETFI GLSCSIMVEL VFQPTRAANI AKLELSRSFH ALYECASLFG AKASKADIME SQKKLRSHLN ELKKFTAEAH AEPSFWFSPF
601: NFSCYEKLFK SLSKMADLLQ FSGYAIGFLG EQGKTKSPQC KEILSNVDKD LKSLTESIGL LAKSFEEITL LKSLDALEKA LAKSDNTSWD IELGKTPNPS
701: FSTAVSEPEK ILETYLQHCR SVADGLFRVE EDGEEEVEVD KSEVVLSLCA LGFCVERIGK ETREIEEMVK EVVQSENPSS HVNLHEISCK IRSLYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)