AT1G78110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29391879..29392907 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38998.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.10 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKGNNGNRG SSSSGYSADL LVCFPSRTHL ALTPKPICSP SRPSDSSTNR RPHHRRQLSK LSGGGGGGHG SPVLWAKQAS SKNMGGDEIA EPTSPKVTCA 101: GQIKVRPSKC GGRGKNWQSV MEEIERIHDN RSQSKFFGLK KDVMGFLTCL RNIKFDFRCF GDFRHADVTS DDDEEEDDDD DEEEEVVEGE EEENSKTVFS 201: KWFMVLQEEQ NNKDDDKNNN KCDEKRDLED TETEPAVPPP NALLLMRCRS APAKSWLEER MKVKTEQEKR EEQKEEKETE DQETSMKTKK KDLRSLMEEE 301: KMELVLMRYD TEFYRLSSDI AKETWVVGGI QDPLSRSRSW KN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)