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AT3G51710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.550
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-mannose binding lectin protein with Apple-like carbohydrate-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-mannose binding lectin protein with Apple-like carbohydrate-binding domain; FUNCTIONS IN: sugar binding; INVOLVED IN: recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT5G03700.1); Has 1533 Blast hits to 1511 proteins in 55 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 1529; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFG5eggNOG:ENOG410YE61EMBL:AL132968EMBL:CP002686
EnsemblPlants:AT3G51710EnsemblPlants:AT3G51710.1entrez:824334Gene3D:2.90.10.10
GeneID:824334GO:GO:0016021GO:GO:0030246Gramene:AT3G51710.1
hmmpanther:PTHR32444hmmpanther:PTHR32444:SF6HOGENOM:HOG000091089InterPro:IPR001480
InterPro:IPR003609KEGG:ath:AT3G51710OMA:SACNATTPfam:PF01453
Pfscan:PS50927Pfscan:PS50948PhylomeDB:Q9SCT7PIR:T46067
PROSITE:PS50927PROSITE:PS50948Proteomes:UP000006548RefSeq:NP_190739.1
SMART:SM00108SMART:SM00473SMR:Q9SCT7SUPFAM:SSF51110
TAIR:AT3G51710TMHMM:TMhelixUniGene:At.53895UniProt:Q9SCT7
Coordinates (TAIR10) chr3:+:19182484..19183996
Molecular Weight (calculated) 53233.40 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.16
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMKFYTFTF LICLFSKLQG HCKSDISLGN SLTLTSPLEY TPGFMGKAYI IETESSSTRE PGFKAALTME SSDKDDGRYL CSLQIFLGDV RVWSSGHYSK
101: MYVSSKCIIE LTKDGDLRLK SSYKHVGWRS GTSGQGVERL EIQSTGNLVL VDAKNLIKWQ SFNFPTDVML SGQRLDVATQ LTSFPNDSTL FYSFEVLRDK
201: IALFLNLNKL KYSYWEYKPR EKNTTVNFVR LGLKGLDLFD DNSRIIGRIE QPLIRFLALG NRTGNLGLYS YKPEKGKFEA TFQAVSDTCD LPVACKPYGI
301: CTFSKSCSCI KVVSNGYCSS INGEEAVSVK RLCDHEMVEL NGVTTVLRNG TQVRNISKER CEELCKKDCE CGAASYSVSE ESCVMYGIVM GVKQIERVSG
401: LSYMVKIPKG VRLSDEKSNV RKWVVGLVGG IDGFVILLLI SGFAFYFIRK RRKSLLLPPP PPPPPPLSQQ PANTDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)