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AT1G66140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger protein 4
Curator
Summary (TAIR10)
Encodes a zinc finger protein containing only a single zinc finger.
Computational
Description (TAIR10)
zinc finger protein 4 (ZFP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1119 Blast hits to 1118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 1103; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
DNASU:842928eggNOG:ENOG410IZXQeggNOG:ENOG410ZCT7EMBL:AK230229
EMBL:AK230232EMBL:AK230250EnsemblPlants:AT1G66140EnsemblPlants:AT1G66140.1
entrez:842928ExpressionAtlas:Q0WLF4GeneID:842928GO:GO:0046872
Gramene:AT1G66140.1InterPro:IPR007087KEGG:ath:AT1G66140OMA:EMKSSAR
Pfam:Q39263Pfscan:PS50157PhylomeDB:Q0WLF4PROSITE:PS00028
PROSITE:PS50157RefSeq:NP_176788.1scanprosite:PS00028SMR:Q0WLF4
STRING:3702.AT1G66140.1SUPFAM:SSF57667TAIR:AT1G66140tair10-symbols:ZFP4
UniGene:At.25527UniProt:Q0WLF4UniProt:Q39263
Coordinates (TAIR10) chr1:-:24620063..24620845
Molecular Weight (calculated) 28310.10 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.49
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL
101: GGHQNAHKRE RTLAKRAMRM GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT PETLIRNIAR FNQGYFGNCI
201: PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF LDVKQAMDME SSLPDLTLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)