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AT4G32270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.711
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25340.1); Has 132 Blast hits to 130 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ9VeggNOG:ENOG410YVUNEMBL:AK117743EMBL:CP002687
EnsemblPlants:AT4G32270EnsemblPlants:AT4G32270.1entrez:829360ExpressionAtlas:Q8GYB5
GeneID:829360GO:GO:0005886Gramene:AT4G32270.1hmmpanther:PTHR14942
hmmpanther:PTHR14942:SF2HOGENOM:HOG000015150InterPro:IPR029071OMA:IRHISNY
PhylomeDB:Q8GYB5Proteomes:UP000006548RefSeq:NP_194954.2SMR:Q8GYB5
SUPFAM:SSF54236TAIR:AT4G32270UniGene:At.46745UniProt:Q8GYB5
Coordinates (TAIR10) chr4:-:15575015..15576360
Molecular Weight (calculated) 27269.10 Da
IEP (calculated) 10.61
GRAVY (calculated) -0.42
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVPPRRSLA ASLSPLRLID GLPRRRSFNY NQMPEEPIKL TVLKLDGSSF GIQVLKTATV GELKMAVEAA FSHLPISGPG KISWPHVWGQ FCLSYEDKRL
101: INESEYLTEF GIKDGDQLRF IRHISNYCML MVKHKSKTPR VSSFKQLKLF STTPETRKKN VIREVEEDGV VDSIPRSQPS FLATVLGGLL SYKSTPSQRG
201: TKYRNVTASR VFNKLIARFR FKCNSEKDVW NRKKLISET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)