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AT1G13910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G61240.1); Has 85487 Blast hits to 26338 proteins in 1000 species: Archae - 30; Bacteria - 6164; Metazoa - 15752; Fungi - 920; Plants - 57746; Viruses - 0; Other Eukaryotes - 4875 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G13910-MONOMEReggNOG:COG4886eggNOG:KOG0619EMBL:AK117567
EMBL:BT006038EMBL:CP002684EnsemblPlants:AT1G13910EnsemblPlants:AT1G13910.1
entrez:837950Gene3D:3.80.10.10GeneID:837950Gramene:AT1G13910.1
hmmpanther:PTHR27000hmmpanther:PTHR27000:SF120InterPro:IPR001611InterPro:IPR003591
InterPro:IPR032675KEGG:ath:AT1G13910OMA:ENHFTGRPfam:PF13855
PhylomeDB:Q8GYK0Proteomes:UP000006548RefSeq:NP_172844.1SMART:SM00369
SMR:Q8GYK0STRING:3702.AT1G13910.1SUPFAM:SSF52058TAIR:AT1G13910
TMHMM:TMhelixUniGene:At.42001UniProt:Q8GYK0
Coordinates (TAIR10) chr1:+:4755955..4757814
Molecular Weight (calculated) 37025.50 Da
IEP (calculated) 9.48
GRAVY (calculated) 0.04
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLSLSLYL ILRIYALLLL FNVSFAKTLK RDMKALNEIK KLVGWRLVYS WVGDDPCGDG VLPPWSGVTC SKVGDYRVVV KLEVYSMSIV GNFPKAITKL
101: LDLTVLDMHN NKLTGPIPPE IGRLKRLITL NLRWNKLQQA LPPEIGGLKS LTYLYLSFNN FKGEIPKELA NLHELQYLHI QENHFTGRIP AELGTLQKLR
201: HLDAGNNNLV GSISDLFRIE GCFPALRNLF LNNNYLTGGL PNKLANLTNL EILYLSFNKM TGAIPAALAS IPRLTNLHLD HNLFNGSIPE AFYKHPNLKD
301: MYIEGNAFKS DVKAIGAHKV LELSDTDFLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)