AT1G67080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : abscisic acid (aba)-deficient 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein involved in the photoprotection of PSII. An aba4-1 mutant completely lacks neoxanthin,a component of the chromophore of the peripheral antenna system in PSII. ABA4 is required for neoxanthin biosynthesis, an intermediary step in abscisic acid biosynthesis, but no catalytic activity has been detected for the ABA4 protein. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
abscisic acid (ABA)-deficient 4 (ABA4); INVOLVED IN: abscisic acid biosynthetic process, regulation of superoxide anion generation, xanthophyll metabolic process, photoprotection; LOCATED IN: PSII associated light-harvesting complex II, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 723 Blast hits to 723 proteins in 64 species: Archae - 0; Bacteria - 78; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25045405..25046681 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24625.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.32 | ||||||||||||||||||||||||||||||||||||||||
| Length | 220 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFSSFISQP LSSSLSVMKR NVSAKRSELC LDSSKIRLDH RWSFIGGSRI SVQSNSYTVV HKKFSGVRAS WLTTTQIASS VFAVGTTAVL PFYTLMVVAP 101: KAEITKKCME SSVPYIILGV LYVYLLYISW TPETLKYMFS SKYMLPELSG IAKMFSSEMT LASAWIHLLV VDLFAARQVY NDGLENQIET RHSVSLCLLF 201: CPVGIVSHFV TKAIINNQYK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)