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AT1G56700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.681
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase C15, pyroglutamyl peptidase I-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase C15, pyroglutamyl peptidase I-like; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C15, pyroglutamyl peptidase I (InterPro:IPR000816), Peptidase C15, pyroglutamyl peptidase I-like (InterPro:IPR016125); BEST Arabidopsis thaliana protein match is: Peptidase C15, pyroglutamyl peptidase I-like (TAIR:AT1G23440.1); Has 2025 Blast hits to 2024 proteins in 879 species: Archae - 113; Bacteria - 1588; Metazoa - 114; Fungi - 17; Plants - 100; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2039eggNOG:KOG4755EMBL:AC009323EMBL:AK227509
EMBL:AY086107EMBL:BT005858EMBL:CP002684EnsemblPlants:AT1G56700
EnsemblPlants:AT1G56700.1EnsemblPlants:AT1G56700.2entrez:842126ExpressionAtlas:Q9FXC0
Gene3D:3.40.630.20GeneID:842126GO:GO:0005829GO:GO:0016920
Gramene:AT1G56700.1Gramene:AT1G56700.2hmmpanther:PTHR23402hmmpanther:PTHR23402:SF17
HOGENOM:HOG000272727InterPro:IPR000816InterPro:IPR016125KEGG:ath:AT1G56700
KO:K01304MEROPS:C15.A02OMA:RKIGYDVPANTHER:PTHR23402
Pfam:PF01470PhylomeDB:Q9FXC0PIR:H96608PIRSF:PIRSF015592
Proteomes:UP000006548RefSeq:NP_001077729.1RefSeq:NP_564721.1SMR:Q9FXC0
SUPFAM:SSF53182TAIR:AT1G56700UniGene:At.26992UniProt:Q9FXC0
Coordinates (TAIR10) chr1:+:21256743..21257640
Molecular Weight (calculated) 24047.70 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.15
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEGPTGVT IHITGFKKFH GVAENPTEKM ANNLKEYLAK NCVSKDVNLG SCTVLETAGQ GALASLYQLL QSAVNTKESE SLTGKTIWVH FGVNSGATKF
101: AIEQQAVNEA TFRCPDELGW KPQNLPIVPS DGPISTVRKT NLPVEEITKA LEKNGFEVIT SDDAGRFVCN YVYYHSLRFA EQNKTRSLFV HVPLFVAVDE
201: ETQMRFTVSL LEVLASICK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)