AT3G03360.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G18150.1); Has 2219 Blast hits to 2186 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 2203; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:795218..796918 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54951.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 481 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKESQENST RPDASSTVFS SSKSTCASPS YLKEAGDLIS RLPDDILQLI LSYLPTRLAI KTSVLSRRWR HVWSDTWSLS FHRDRPDAPC INRILDRYRA 101: PKMMSFRICS CCRAACISRP DTHADIDSWI NFAMSRNVEN LSLYLDEDKY DIPEFLYINS SLKQLYLDFG CKKDFISLNP KCSVSWTSLK NLSLYHCNIS 201: DESIAIILSG CPILESLLLF FCKKLKVLDL SKSPRLITLE ITRRCRMEPT QLVAPHIRCL RLINSEKPCA LVDVSSLSQA ELDITAYAIV DNKLEADFHQ 301: TMVVKMLEKC QNVEKLTLGA NFLKMLSLAE LRGVSFPKLK AKALILETMI SRYVIHGIVK VLQNSPDLKK LTIHPMGSAG SYPIPEEHID IYLDSHGLNW 401: DPSWSSEFKN TSRRNVESKQ VASFLQLVLK TISTLELIVA RLEGYIKGRR FVELRQMVPM LPRNNDVSIV LSSRRKRFRV T |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)