suba logo
AT1G72990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.556
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-galactosidase 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-galactosidase 17 (BGAL17); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-galactosidase 3 (TAIR:AT4G36360.2); Has 2090 Blast hits to 2034 proteins in 466 species: Archae - 15; Bacteria - 876; Metazoa - 411; Fungi - 209; Plants - 521; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G72990-MONOMERBioCyc:ARA:GQT-406-MONOMERCAZy:GH35EC:3.2.1.23
eggNOG:COG1874eggNOG:KOG0496EMBL:AC008017EMBL:AY058198
EMBL:AY142008EMBL:CP002684EnsemblPlants:AT1G72990EnsemblPlants:AT1G72990.1
entrez:843630Gene3D:2.60.120.260Gene3D:3.20.20.80GeneID:843630
Genevisible:Q93Z24GO:GO:0004565GO:GO:0005975GO:GO:0048046
hmmpanther:PTHR23421hmmpanther:PTHR23421:SF13HOGENOM:HOG000221607InParanoid:Q93Z24
InterPro:IPR001944InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853
InterPro:IPR019801InterPro:IPR025300InterPro:IPR026283InterPro:IPR031330
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23
KEGG:00604+3.2.1.23KEGG:ath:AT1G72990KO:K12309OMA:FHEPLPG
PANTHER:PTHR23421PaxDb:Q93Z24Pfam:PF01301Pfam:PF13364
Pfam:Q93Z24PhylomeDB:Q93Z24PIR:C96755PIRSF:PIRSF006336
PRIDE:Q93Z24PRINTS:PR00742PRO:PR:Q93Z24PROSITE:PS01182
ProteinModelPortal:Q93Z24Proteomes:UP000006548Reactome:R-ATH-1660662Reactome:R-ATH-2022857
Reactome:R-ATH-2024096RefSeq:NP_001031273.1RefSeq:NP_565051.1scanprosite:PS01182
SMR:Q93Z24STRING:3702.AT1G72990.1SUPFAM:SSF49785SUPFAM:SSF51445
TAIR:AT1G72990tair10-symbols:BGAL17TMHMM:TMhelixUniGene:At.11678
UniProt:Q93Z24
Coordinates (TAIR10) chr1:-:27457480..27462168
Molecular Weight (calculated) 78644.30 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.24
Length 697 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMTSWPSTG RQRRHQLASM LLLVLVVVGI YVPVFALLPS LSYTPQSLPS AIPQDEKMIS RKFYIKDDNF WKDGNRFQII GGDLHYFRVL PEYWEDRLLR
101: ANALGLNTIQ VYVPWNLHEP KPGKMVFEGI GDLVSFLKLC EKLDFLVMLR AGPYICGEWD LGGFPAWLLA VKPRLQLRTS DPVYLKLVER WWDVLLPKVF
201: PLLYSNGGPV IMVQIENEYG SYGNDKAYLR KLVSMARGHL GDDIIVYTTD GGTKETLDKG TVPVADVYSA VDFSTGDDPW PIFKLQKKFN APGRSPPLSS
301: EFYTGWLTHW GEKITKTDAE FTAASLEKIL SRNGSAVLYM VHGGTNFGFY NGANTGSEES DYKPDLTSYD YDAPIKESGD IDNPKFQALQ RVIKKYNASP
401: HPISPSNKQR KAYGSIKMQM TTSLFDLVRM TDPADVITSA NPISMESVGQ MFGFLLYESS YIAKKSGNTL RIPKVHDRAQ VFVSCLSQDV DVGVLRYIGT
501: TERWNNQPIS LPTIECTTNT SLFILVENMG RVNYGPYIFD DKGILSSVYL DGQILHGWKM IPIPFHNLNQ EPNLTFEMQH TKNRSKKFEL TNDVGRKEPA
601: LFAGEFSINS EEEIKDTYLS FNGWGKGVAF VNEFNIGRYW PSVGPQCNLY VPAPLLKRGK NTLVVFELES PHLELSLEAV DHQDFTCGSN VSKVNQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)