AT5G05540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : small RNA degrading nuclease 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:1636419..1638759 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53185.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 466 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEDVLATAEG VVLVKLVKVA QKLGLKGENG TWKEFLDFYD KQLGSSSLSD PSKRRKDDLV AFLTTLKKKE DLQLLAKSLK LDNDVFEKFK KKSLDETAEQ 101: RLVRMTLTHD EYPLDYLFPS NAEDWVRTGL GKKKMEPTKI EMIAIDCEMV LCEDGSEAVV RVAAVDRDLK VILDEFVKPN QPVVDYRTFI TGLTAQDLEK 201: ATISVVDIQE KLLMFISEDT ILVGQSLNHD LKVLKVDHAR VIDTSLVFKY NYDGTRRPLR LKRPSLNYLC KCILGYEVQK EGVPHNCVHD AEAAMKLVLA 301: ILDNGAETSV PLSKEMLEAE KSKLYLHRIP CNVPYEELNG VVSRDIPHEV KPSKKQDRHY YSAIVVFKSP EEANQAFENI AGDFGKDSRG LSQKQIFLEP 401: SSSEPRLYVL VRKMVEDDLV GEVIAEENNA SSKKRKRENH SKGTRDRRRC KPLSRRKQRS NVKRRR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)