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AT2G16650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proteinaceous RNase P 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proteinaceous RNase P 2 (PRORP2); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribonuclease Zc3h12a-like (InterPro:IPR021869), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 397 Blast hits to 377 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
EC:3.1.26.5eggNOG:COG0534eggNOG:KOG1347EMBL:AC005825
EMBL:AK175948EMBL:CP002685EnsemblPlants:AT2G16650EnsemblPlants:AT2G16650.1
entrez:816166GeneID:816166Genevisible:Q680B9GO:GO:0001682
GO:GO:0004526GO:GO:0005634GO:GO:0006397GO:GO:0043144
GO:GO:0090501GO:GO:0090502Gramene:AT2G16650.1hmmpanther:PTHR13547
hmmpanther:PTHR13547:SF2HOGENOM:HOG000006117InParanoid:Q680B9InterPro:IPR031595
InterPro:IPR033443iPTMnet:Q680B9KEGG:ath:AT2G16650KO:K18213
OMA:TEASHGCPaxDb:Q680B9PDB:5DIZPDB:5FT9
PDBsum:5DIZPDBsum:5FT9Pfam:PF16953Pfam:PF17177
Pfam:Q680B9PhylomeDB:Q680B9PIR:E84542PRIDE:Q680B9
PRO:PR:Q680B9ProteinModelPortal:Q680B9Proteomes:UP000006548RefSeq:NP_179256.3
SMR:Q680B9STRING:3702.AT2G16650.1TAIR:AT2G16650tair10-symbols:PRORP2
UniGene:At.29161UniProt:Q680B9
Coordinates (TAIR10) chr2:-:7215937..7218061
Molecular Weight (calculated) 59231.10 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.38
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASDQHRSR RHDESSSRPN KKKKVSRNPE TNLLFNLNSC SKSKDLSAAL ALYDAAITSS EVRLSQQHFQ TLLYLCSASI TDISLQYLAI DRGFEIFDRM
101: VSSGISPNEA SVTSVARLAA AKGNGDYAFK VVKEFVSVGG VSIPRLRTYA PALLCFCEKL EAEKGYEVEE HMEAAGIALE EAEISALLKV SAATGRENKV
201: YRYLHKLREY VGCVSEETLK IIEEWFCGEK AGEVGDNGIG SDVGMLREAV LNNGGGWHGH GWVGEGKWTV KKGNVSSTGR CLSCSEQLAC VDTNEVETQK
301: FVDSLVALAM DRKTKMNSCE TNVVFSEFQD WLEKHGDYEA IVDGANIGLY QQNFVDGSFS LSQLESVMKE LYRESGNNKW PLILLHKRRV KTLLENPTHR
401: NLVEEWISNG VLYATPPGSN DDWYWLYAAA KLKCLLVTND EMRDHIFELL GSTFFQKWKE RHQVRYTFVK GNLKLEMPSP FSVVIQESEK GSWHFPVSCE
501: NNEESSRTWM CISRQSILDS PKSNGKIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)