AT2G16650.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : proteinaceous RNase P 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
proteinaceous RNase P 2 (PRORP2); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribonuclease Zc3h12a-like (InterPro:IPR021869), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 397 Blast hits to 377 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:7215937..7218061 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 59231.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 528 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAASDQHRSR RHDESSSRPN KKKKVSRNPE TNLLFNLNSC SKSKDLSAAL ALYDAAITSS EVRLSQQHFQ TLLYLCSASI TDISLQYLAI DRGFEIFDRM 101: VSSGISPNEA SVTSVARLAA AKGNGDYAFK VVKEFVSVGG VSIPRLRTYA PALLCFCEKL EAEKGYEVEE HMEAAGIALE EAEISALLKV SAATGRENKV 201: YRYLHKLREY VGCVSEETLK IIEEWFCGEK AGEVGDNGIG SDVGMLREAV LNNGGGWHGH GWVGEGKWTV KKGNVSSTGR CLSCSEQLAC VDTNEVETQK 301: FVDSLVALAM DRKTKMNSCE TNVVFSEFQD WLEKHGDYEA IVDGANIGLY QQNFVDGSFS LSQLESVMKE LYRESGNNKW PLILLHKRRV KTLLENPTHR 401: NLVEEWISNG VLYATPPGSN DDWYWLYAAA KLKCLLVTND EMRDHIFELL GSTFFQKWKE RHQVRYTFVK GNLKLEMPSP FSVVIQESEK GSWHFPVSCE 501: NNEESSRTWM CISRQSILDS PKSNGKIP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)