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AT4G00040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chalcone and stilbene synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G00040-MONOMEREC:2.3.1.-eggNOG:COG3424eggNOG:ENOG410IKZU
EMBL:AF069299EMBL:AL161471EMBL:AY086158EMBL:BT001993
EMBL:BT008463EMBL:CP002687EnsemblPlants:AT4G00040EnsemblPlants:AT4G00040.1
entrez:828224Gene3D:3.40.47.10GeneID:828224Genevisible:O81305
GO:GO:0005783GO:GO:0007275GO:GO:0009813GO:GO:0016747
Gramene:AT4G00040.1hmmpanther:PTHR11877hmmpanther:PTHR11877:SF25HOGENOM:HOG000245460
InterPro:IPR001099InterPro:IPR011141InterPro:IPR012328InterPro:IPR016039
KEGG:ath:AT4G00040OMA:NTIFYIMPaxDb:O81305Pfam:O81305
Pfam:PF00195Pfam:PF02797PhylomeDB:O81305PIR:T01332
PIRSF:PIRSF000451PRO:PR:O81305ProteinModelPortal:O81305Proteomes:UP000006548
RefSeq:NP_191915.1SMR:O81305STRING:3702.AT4G00040.1SUPFAM:SSF53901
TAIR:AT4G00040UniGene:At.34610UniGene:At.48809UniGene:At.67611
UniPathway:UPA00154UniProt:O81305
Coordinates (TAIR10) chr4:+:14653..15897
Molecular Weight (calculated) 42417.30 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.17
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVSARVEKQ KRVAYQGKAT VLALGKALPS NVVSQENLVE EYLREIKCDN LSIKDKLQHL CKSTTVKTRY TVMSRETLHK YPELATEGSP TIKQRLEIAN
101: DAVVQMAYEA SLVCIKEWGR AVEDITHLVY VSSSEFRLPG GDLYLSAQLG LSNEVQRVML YFLGCYGGLS GLRVAKDIAE NNPGSRVLLT TSETTVLGFR
201: PPNKARPYNL VGAALFGDGA AALIIGADPT ESESPFMELH CAMQQFLPQT QGVIDGRLSE EGITFKLGRD LPQKIEDNVE EFCKKLVAKA GSGALELNDL
301: FWAVHPGGPA ILSGLETKLK LKPEKLECSR RALMDYGNVS SNTIFYIMDK VRDELEKKGT EGEEWGLGLA FGPGITFEGF LMRNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)