AT4G21060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.946 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Galactosyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2332 Blast hits to 2297 proteins in 115 species: Archae - 0; Bacteria - 6; Metazoa - 1696; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:11240730..11244860 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84302.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 741 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSRLARFV SEVAPPQFVT VMRRHRAAKQ KLDTIKEEEN KEDSFNGGMV VMMKTSHQHT LLIFRSCRDL AAIVGFRILL FTGFSGFYLV FLAFKFPHFI 101: EMVAMLSGDT GLDGALSDTS LDVSLSGSLR NDMLNRKLED EDHQSGPSTT QKVSPEEKIN GSKQIQPLLF RYGRISGEVM RRRNRTIHMS PFERMADEAW 201: ILGSKAWEDV DKFEVDKINE SASIFEGKVE SCPSQISMNG DDLNKANRIM LLPCGLAAGS SITILGTPQY AHKESVPQRS RLTRSYGMVL VSQFMVELQG 301: LKTGDGEYPP KILHLNPRIK GDWNHRPVIE HNTCYRMQWG VAQRCDGTPS KKDADVLVDG FRRCEKWTQN DIIDMVDSKE SKTTSWFKRF IGREQKPEVT 401: WSFPFAEGKV FVLTLRAGID GFHINVGGRH VSSFPYRPGF TIEDATGLAV TGDVDIHSIH ATSLSTSHPS FSPQKAIEFS SEWKAPPLPG TPFRLFMGVL 501: SATNHFSERM AVRKTWMQHP SIKSSDVVAR FFVALNPRKE VNAMLKKEAE YFGDIVILPF MDRYELVVLK TIAICEFGVQ NVTAPYIMKC DDDTFIRVES 601: ILKQIDGVSP EKSLYMGNLN LRHRPLRTGK WTVTWEEWPE AVYPPYANGP GYIISSNIAK YIVSQNSRHK LRLFKMEDVS MGLWVEQFNA SMQPVEYSHS 701: WKFCQYGCTL NYYTAHYQSP SQMMCLWDNL LKGRPQCCNF R |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)