AT2G17260.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : glutamate receptor 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a glutamate receptor. Involved in calcium-programmed stomatal closure. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
glutamate receptor 2 (GLR2); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, stomatal movement; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2 (TAIR:AT4G35290.1); Has 6275 Blast hits to 6137 proteins in 506 species: Archae - 28; Bacteria - 848; Metazoa - 4591; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7504780..7508266 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 106184.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 951 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSFPTFSFHF SKVSLCFLLK QLLLYGFFFS MNWVLLSFII VLGGGLLLSE GASSSRPPVI KVGAIFGLNT MYGETANIAF KAAEEDVNSD PSFLGGSKLR 101: ILMNDAKRSG FLSIMGALQF METDVVAIIG PQTSIMAHVL SHLANELTVP MLSFTALDPT LSPLQFPFFV QTAPSDLFLM RAIAEMITYY GWSDVVALYN 201: DDDNSRNGVT ALGDELEERR CKISYKAVLP LDVVITSPVE IIEELIKIRG MESRVIVVNT FPNTGKMIFK EAERLGMMEK GYVWIATTWL SSVLDSNLPL 301: DTKLVNGVLT LRLHTPDSRK KRDFAARWKN KLSNNKTIGL NVYGLYAYDT VWIIARAVKT LLEAGGNLSF SNDAKLGSLK GEALNLSALS RFDQGSQLLD 401: YIVHTKMSGL TGPVQFHPDR SMLQPSYDII NLVDDRVHQI GYWSNYSGLS IVPPESFYSK PPNRSSSNQH LNSVTWPGGT SVTPRGWIFR NNGRRLRIGV 501: PDRASFKDFV SRVNGSSNKV QGYCIDVFEA AVKLLSYPVP HEFIFFGDGL TNPNYNELVN KVTTGVDFDA VVGDIAIVTK RTRIVDFTQP YIESGLVVVA 601: PVTRLNENPW AFLRPFTLPM WAVTASFFVI VGAAIWILEH RINDEFRGPP RRQIITILWF TFSTMFFSHR ETTVSTLGRM VLLIWLFVVL IITSSYTASL 701: TSILTVQQLN SPIKGVDTLI SSTGRIGFQV GSFAENYMTD ELNIASSRLV PLASPEEYAN ALQNGTVAAI VDERPYIDLF LSDYCKFAIR GQEFTRCGWG 801: FAFPRDSPLA VDMSTAILGL SETGELQKIH DRWLSKSNCS SPHGSQSGDS EQLNVHSFWG MFLVVGIACL VALFIHFFKI IRDFCKDTPE VVVEEAIPSP 901: KSSRLTKLQT FLAFVDEKEE ETKRRLKRKR NNDHSMNANS IISRTASRRP I |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)