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AT3G51480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate receptor 3.6
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 3.6 (GLR3.6); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.3 (TAIR:AT1G42540.1); Has 6142 Blast hits to 5992 proteins in 427 species: Archae - 49; Bacteria - 557; Metazoa - 4617; Fungi - 0; Plants - 640; Viruses - 0; Other Eukaryotes - 279 (source: NCBI BLink).
Protein Annotations
BioGrid:9629eggNOG:ENOG410XQQVeggNOG:KOG1052EMBL:AL133452
EMBL:BT004264EMBL:CP002686EnsemblPlants:AT3G51480EnsemblPlants:AT3G51480.1
entrez:824311GeneID:824311Genevisible:Q84W41GO:GO:0004970
GO:GO:0005262GO:GO:0005622GO:GO:0005886GO:GO:0006816
GO:GO:0008066GO:GO:0009611GO:GO:0009864GO:GO:0016021
GO:GO:0019722GO:GO:0070588GO:GO:0071230Gramene:AT3G51480.1
hmmpanther:PTHR18966hmmpanther:PTHR18966:SF241HOGENOM:HOG000239558InParanoid:Q84W41
InterPro:IPR001320InterPro:IPR001638InterPro:IPR001828InterPro:IPR017103
InterPro:IPR028082KEGG:ath:AT3G51480KO:K05387OMA:PTRENIT
PaxDb:Q84W41Pfam:PF00060Pfam:PF00497Pfam:PF01094
Pfam:Q84W41PhylomeDB:Q84W41PIR:T45779PIRSF:PIRSF037090
PRIDE:Q84W41PRO:PR:Q84W41ProteinModelPortal:Q84W41Proteomes:UP000006548
RefSeq:NP_190716.3SMART:SM00079SMR:Q84W41STRING:3702.AT3G51480.1
SUPFAM:SSF53822SUPFAM:SSF53850TAIR:AT3G51480tair10-symbols:ATGLR3.6
tair10-symbols:GLR3.6TMHMM:TMhelixUniGene:At.35384UniProt:Q84W41
Coordinates (TAIR10) chr3:+:19101256..19104681
Molecular Weight (calculated) 100536.00 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.11
Length 903 amino acids
Sequence (TAIR10)
(BLAST)
001: MKWFLLMLII CNAVPLQGLT KIVSARPQVV NIGSVFTFNS LIGKVIKVAM DAAVEDVNAS PSILNTTTLR IIMHDTKYNG FMSIMEPLQF MESETVAIIG
101: PQRSTTARVV AHVATELKIP ILSFSATDPT MSPLQFPFFI RTSQNDLFQM AAIADIVQFY GWREVVAIYG DDDYGRNGVA ALGDRLSEKR CRISYKAALP
201: PAPTRENITD LLIKVALSES RIIVVHASFI WGLELFNVAR NLGMMSTGYV WIATNWLSTI IDTDSPLPLD TINNIQGVIT LRLHTPNSIM KQNFVQRWHN
301: LTHVGLSTYA LYAYDTVWLL AQAIDDFFKK GGNVSFSKNP IISELGGGNL HLDALKVFDG GKIFLESILQ VDRIGLTGRM KFTSDRNLVN PAFDVLNVIG
401: TGYTTIGYWF NHSGLSVMPA DEMENTSFSG QKLHSVVWPG HSIKIPRGWV FSNNGRHLRI GVPNRYRFEE VVSVKSNGMI TGFCVDVFIA AINLLPYAVP
501: FELVAFGNGH DNPSNSELVR LITTGVYDAG VGDITIITER TKMADFTQPY VESGLVVVAP VRKLGSSAMA FLRPFTPQMW LIAAASFLIV GAVIWCLEHK
601: HNDEFRGPPR RQVITTFWFS FSTLFFSHRE TTTSNLGRIV LIIWLFVVLI INSSYTASLT SILTVHQLSS PIKGIETLQT NHDPIGYPQG SFVRDYLIHE
701: LNIHVSRLVP LRSPEEYDKA LRDGPGKGGV AAVVDERAYI ELFLSNRCEF GIVGQEFTKN GWGFAFPRNS PLAVDVSAAI LQLSENGDMQ RIRDKWLLRK
801: ACSLQGAEIE VDRLELKSFW GLFVVCGVAC VLALAVYTVL MIRQFGQQCP EEAEGSIRRR SSPSARIHSF LSFVKEKEED AKARSSRERQ LEDISANGSS
901: RCN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)