suba logo
AT2G38460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.951
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : iron regulated 1
Curator
Summary (TAIR10)
Encodes IRON REGULATED1 (IREG1/FPN1), one of the Arabidopsis orthologs (AT2G38460/IREG1/FPN1 and AT5G03570/IREG2/FPN2) the iron efflux transporter ferroportin (FPN) identified in animals.
Computational
Description (TAIR10)
iron regulated 1 (IREG1); CONTAINS InterPro DOMAIN/s: Ferroporti-1 (InterPro:IPR009716), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: iron regulated 2 (TAIR:AT5G03570.2); Has 345 Blast hits to 287 proteins in 82 species: Archae - 0; Bacteria - 2; Metazoa - 164; Fungi - 61; Plants - 95; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
BioGrid:3769eggNOG:ENOG410XS3FeggNOG:KOG2601EMBL:AC004683
EMBL:CP002685EnsemblPlants:AT2G38460EnsemblPlants:AT2G38460.1entrez:818427
GeneID:818427Genevisible:O80905GO:GO:0005381GO:GO:0005886
GO:GO:0006824GO:GO:0016021Gramene:AT2G38460.1hmmpanther:PTHR11660
hmmpanther:PTHR11660:SF57HOGENOM:HOG000234273InParanoid:O80905InterPro:IPR009716
InterPro:IPR020846iPTMnet:O80905KEGG:ath:AT2G38460KO:K14685
OMA:CLTLCVIPaxDb:O80905Pfam:O80905Pfam:PF06963
PhylomeDB:O80905PIR:T02499PRIDE:O80905PRO:PR:O80905
ProteinModelPortal:O80905Proteomes:UP000006548RefSeq:NP_181380.1STRING:3702.AT2G38460.1
SUPFAM:SSF103473TAIR:AT2G38460tair10-symbols:ATIREG1tair10-symbols:FPN1
tair10-symbols:IREG1TCDB:2.A.100.1.3TMHMM:TMhelixUniGene:At.20444
UniProt:O80905
Coordinates (TAIR10) chr2:+:16103603..16105930
Molecular Weight (calculated) 58207.70 Da
IEP (calculated) 9.29
GRAVY (calculated) 0.45
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MENETELRVV HQEEQQREEG EDESQPQNPP PALRRRFVIY LYVGYFLARW SARTWEFSVA LYMIHLWPNS LLLAAIYGAI ESGSTAIFGP IVGQWVEGMD
101: YVKVLRLWLL FQNLSYTIAG GAVIKLLLVS DLKSRNLPVF AILIVLTNLA GAIGVLSTLA GTILIERDWA VVMSEGHPPA VLTKMNSVIR GIDLSSKLLS
201: PVITGLIISF VSLKASAITF AAWATITAWV EYWLFISVYS GVPAITRSNE RRILRSRTKQ VEGRDAPVSV SIVPGTEEGY TGNPPSRTGI LVILDRMSKS
301: SFVGAWRIYF NQEVVLPGVS LALLFFTVLS FGTLMTATLQ WEGIPTYIIG IGRGISATVG LAATLVYPLM QSRLSTLRTG LWSFWSQWSC LLVCVGSIWV
401: KKDKIASYML MAGVAASRLG LWMFDLAVIQ QMQDLVSESD RCVVGGVQNS LQSALDLMAY LLGIIVSNPK DFWILTLISF STVSLAGMLY TIHLYRIRNH
501: IFHLEKIPLL NKCIFKLLPS RGNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)