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AT5G27730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.974
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1624)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1624); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1624 (InterPro:IPR012429); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1624) (TAIR:AT5G47900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2619-MONOMEReggNOG:COG4299eggNOG:KOG4683EMBL:AY034969
EMBL:BT002370EMBL:CP002688EnsemblPlants:AT5G27730EnsemblPlants:AT5G27730.1
entrez:832835GeneID:832835GO:GO:0016021Gramene:AT5G27730.1
hmmpanther:PTHR31061hmmpanther:PTHR31061:SF8HOGENOM:HOG000243739InterPro:IPR012429
KEGG:ath:AT5G27730KO:K10532OMA:PAWRRSKPfam:PF07786
PhylomeDB:Q94CC1Proteomes:UP000006548Reactome:R-ATH-2024096RefSeq:NP_568500.1
STRING:3702.AT5G27730.1TAIR:AT5G27730TMHMM:TMhelixUniGene:At.19161
UniProt:Q94CC1
Coordinates (TAIR10) chr5:+:9820311..9822868
Molecular Weight (calculated) 53750.90 Da
IEP (calculated) 8.96
GRAVY (calculated) 0.30
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEIKVERSH DQHLLEPKED TSSSYTRRSL AGNRPRLASL DIFRGLTVAL MILVDDAGGD WPMIAHAPWN GCNLADFVMP FFLFIVGVSI ALSLKRISNK
101: FEACKKVGFR TCKLLFWGLL LQGGFSHAPD ELTYGVDVTM MRFCGILQRI ALSYLVVALV EIFTKDSHEE NLSTGRFSIF KSYYWHWIVA ASVLVIYLAT
201: LYGTYVPDWE FVVYDKDSVL YGKILSVSCG VRGKLNPPCN AVGYVDRQVL GINHMYHHPA WRRSKACTDD SPYEGAIRQD APSWCRAPFE PEGILSSISA
301: ILSTIIGVHF GHIILHLKGH SARLKHWIST GLVLLALGLT LHFTHLMPLN KQLYSFSYIC VTSGAAALVF SSLYSLVDIL EWKHMFLPLK WIGMNAMLVY
401: VMGAEGILAA FFNGWYYRHP HNTLINWIRE HVFIRVWHSR RVGVLMYVIF AEILFWGLVT GVFHRFKIYW KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)